Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq959 280 2e-70 seq928 114 1e-20 seq990 109 6e-19 seq1047 98.7 1e-15 >seq959 Length=28360 Score = 280 bits (310), Expect = 2e-70 Identities = 554/808 (69%), Gaps = 15/808 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||| | ||||||| | || || Sbjct 15621 ATATGGCAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATCTT 15680 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | |||||| | |||| |||| || ||||||| |||||| Sbjct 15681 TCAAAAGATTTGCATGACTGGAACAAGCGCCTGAATGATGACGAGCGTTTCTTCATCTCT 15740 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || |||||||| || || ||||| || ||||||||||| || |||||||| Sbjct 15741 CATGTCCTCGCCTTTTTTGCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGAGCGA 15800 Query 116813 TTCGCTCAG--GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| |||| |||||||| | |||| || || |||||||||||||| |||||| | Sbjct 15801 TTC--TCAGCCGAGGTGCAAATACCCGAAGCACGCTGCTTCTACGGCTTCCAGATCATGA 15858 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930 ||||||| | ||||| || | || || ||||||||||| ||| | || || Sbjct 15859 TGGAGAATATCCACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGAACCGA 15918 Query 116931 AGGAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 | | | || | | | || ||||||||||| | || || ||| || ||||||| Sbjct 15919 AACA-ACGCACGTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAGGCG 15977 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC-TTCGGCGAGCGCCTGGTGGC 117048 || ||||||||||| ||||| || | ||| || | |||||| || || || || Sbjct 15978 GATTGGGCGCTGCGATGGATTAGCGATA-AGAATTCGACGTTCGGCTGTCGTCTCGTTGC 16036 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||||| || || |||||| | ||||| || || ||||| |||| || |||||||| Sbjct 16037 TTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTCAA 16096 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 || || || ||||||||||| ||||| || ||||||||| || ||| | || ||||| Sbjct 16097 AAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAGGG 16156 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA--CCGAGCGCG 117226 |||| ||||| |||||| |||| || || | ||| | | |||| || | Sbjct 16157 CATGCACACAGACTTCGCCTGTCTGCTCTTTTCCCACCTTC-GCAACAAGCCCGATCG-G 16214 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | || || ||| ||| |||| || || ||| |||| || || ||| | || || Sbjct 16215 GAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTGACAGAC 16274 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | |||| || || || || | || | | | |||| |||||||||||||| Sbjct 16275 TCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACATCGAGTTT 16334 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 || ||||| | || ||||||| ||| | | | || | | |||||| | ||||||| Sbjct 16335 GTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTATTACAACGCCACCAACCCA 16394 Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | |||||| |||| Sbjct 16395 TTTGACTTCATGGAGAACATCTCGTTGG 16422 >seq928 Length=40960 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| |||||||| |||| ||||| | | ||||| | Sbjct 285 TTCGTCAAGACCCTCACGGGCAAGACCATCACACTCGAGGTCGAGTCTAGCGACACGATA 344 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | ||| || || | ||||| ||||||||||| | || |||||||| || Sbjct 345 GACAATGTGAAGAGCAAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTCTG 404 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||| |||| || | |||||| | ||||||||||||||||||| Sbjct 405 ATCTTCGCTGGCAAGCAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGAAG 464 Query 40879 G 40879 | Sbjct 465 G 465 >seq990 Length=11377 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| |||||||| |||| ||||| | | |||| | | | ||||| Sbjct 10124 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGA 10183 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| || || ||||| | || |||||||| || |||| ||| |||| Sbjct 10184 GCAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCA 10243 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | || || || || | ||||| || | |||||||||||| || |||||| |||||| | Sbjct 10244 AGCAACTCGAAGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGCACGCTTC 10303 Query 40892 ATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || ||||| || | || || Sbjct 10304 ATCTTGTACTGCGCCTGCGTGGTGG 10328 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || |||||||||||||| | || || || | || Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || ||||| | || |||||||| ||||| ||||||| Sbjct 10390 GACACCATCGACAACG-TGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCA 10448 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| ||||||||||| || || | ||||||||| |||||||| Sbjct 10449 GCAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAA 10508 Query 40869 CATCCAGAAGGA 40880 ||| || || || Sbjct 10509 CATTCAAAAAGA 10520 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| ||||| |||||||| | || |||||| | | Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | ||| || |||| ||||||||||| || || | ||||| Sbjct 10618 GATACGATAGACAACG-TGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCA 10676 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| ||| ||||| || ||||| || | | | || | |||||||| Sbjct 10677 ACAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAA 10736 Query 40869 CATCCAGAAGGA 40880 ||| |||||||| Sbjct 10737 CATTCAGAAGGA 10748 >seq1047 Length=44052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||||||||| ||||| |||||||||| || || |||| || ||||| ||||| || Sbjct 5509 GACAAAGAGGGTATCCCACCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAG 5450 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| ||| || || || ||||||||| ||| || ||||| || | Sbjct 5449 GATGGTCGCACCCTCTCCGATTATAATATTCAGAAGGAGAGCACTCTTCATCTGGTTCTC 5390 Query 40903 CGCTTGAGGGGCGGCGG 40919 |||||| | || || || Sbjct 5389 CGCTTGCGTGGTGGAGG 5373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208361076080