Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq959 280 2e-70
seq928 114 1e-20
seq990 109 6e-19
seq1047 98.7 1e-15
>seq959
Length=28360
Score = 280 bits (310), Expect = 2e-70
Identities = 554/808 (69%), Gaps = 15/808 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| || || || |||||||| | ||||||| | || ||
Sbjct 15621 ATATGGCAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATCTT 15680
Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || | |||||| | |||| |||| || ||||||| ||||||
Sbjct 15681 TCAAAAGATTTGCATGACTGGAACAAGCGCCTGAATGATGACGAGCGTTTCTTCATCTCT 15740
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
|| || || |||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct 15741 CATGTCCTCGCCTTTTTTGCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGAGCGA 15800
Query 116813 TTCGCTCAG--GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| |||| |||||||| | |||| || || |||||||||||||| |||||| |
Sbjct 15801 TTC--TCAGCCGAGGTGCAAATACCCGAAGCACGCTGCTTCTACGGCTTCCAGATCATGA 15858
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930
||||||| | ||||| || | || || ||||||||||| ||| | || ||
Sbjct 15859 TGGAGAATATCCACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGAACCGA 15918
Query 116931 AGGAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989
| | | || | | | || ||||||||||| | || || ||| || |||||||
Sbjct 15919 AACA-ACGCACGTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAGGCG 15977
Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC-TTCGGCGAGCGCCTGGTGGC 117048
|| ||||||||||| ||||| || | ||| || | |||||| || || || ||
Sbjct 15978 GATTGGGCGCTGCGATGGATTAGCGATA-AGAATTCGACGTTCGGCTGTCGTCTCGTTGC 16036
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
||||| || || |||||| | ||||| || || ||||| |||| || ||||||||
Sbjct 16037 TTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTCAA 16096
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
|| || || ||||||||||| ||||| || ||||||||| || ||| | || |||||
Sbjct 16097 AAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAGGG 16156
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA--CCGAGCGCG 117226
|||| ||||| |||||| |||| || || | ||| | | |||| || |
Sbjct 16157 CATGCACACAGACTTCGCCTGTCTGCTCTTTTCCCACCTTC-GCAACAAGCCCGATCG-G 16214
Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286
| || || ||| ||| |||| || || ||| |||| || || ||| | || ||
Sbjct 16215 GAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTGACAGAC 16274
Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346
| |||| || || || || | || | | | |||| ||||||||||||||
Sbjct 16275 TCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACATCGAGTTT 16334
Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406
|| ||||| | || ||||||| ||| | | | || | | |||||| | |||||||
Sbjct 16335 GTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTATTACAACGCCACCAACCCA 16394
Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434
| ||||| ||| | |||||| ||||
Sbjct 16395 TTTGACTTCATGGAGAACATCTCGTTGG 16422
>seq928
Length=40960
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| |||||||| |||| ||||| | | ||||| |
Sbjct 285 TTCGTCAAGACCCTCACGGGCAAGACCATCACACTCGAGGTCGAGTCTAGCGACACGATA 344
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | | ||| || || | ||||| ||||||||||| | || |||||||| ||
Sbjct 345 GACAATGTGAAGAGCAAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTCTG 404
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||| |||| || | |||||| | |||||||||||||||||||
Sbjct 405 ATCTTCGCTGGCAAGCAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGAAG 464
Query 40879 G 40879
|
Sbjct 465 G 465
>seq990
Length=11377
Score = 109 bits (120), Expect = 6e-19
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| |||||||| |||| ||||| | | |||| | | | |||||
Sbjct 10124 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGA 10183
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| |||| ||||| || || ||||| | || |||||||| || |||| ||| ||||
Sbjct 10184 GCAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCA 10243
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| || || || || | ||||| || | |||||||||||| || |||||| |||||| |
Sbjct 10244 AGCAACTCGAAGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGCACGCTTC 10303
Query 40892 ATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||| || ||||| || | || ||
Sbjct 10304 ATCTTGTACTGCGCCTGCGTGGTGG 10328
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || |||||||||||||| | || || || | ||
Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | || ||||| | || |||||||| ||||| |||||||
Sbjct 10390 GACACCATCGACAACG-TGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCA 10448
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | ||| ||||||||||| || || | ||||||||| ||||||||
Sbjct 10449 GCAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAA 10508
Query 40869 CATCCAGAAGGA 40880
||| || || ||
Sbjct 10509 CATTCAAAAAGA 10520
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||| ||||| ||||| |||||||| | || |||||| | |
Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| | ||| || |||| ||||||||||| || || | |||||
Sbjct 10618 GATACGATAGACAACG-TGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCA 10676
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||| |||| ||| ||||| || ||||| || | | | || | ||||||||
Sbjct 10677 ACAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAA 10736
Query 40869 CATCCAGAAGGA 40880
||| ||||||||
Sbjct 10737 CATTCAGAAGGA 10748
>seq1047
Length=44052
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||||||||| ||||| |||||||||| || || |||| || ||||| ||||| ||
Sbjct 5509 GACAAAGAGGGTATCCCACCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAG 5450
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||||||| ||| || || || ||||||||| ||| || ||||| || |
Sbjct 5449 GATGGTCGCACCCTCTCCGATTATAATATTCAGAAGGAGAGCACTCTTCATCTGGTTCTC 5390
Query 40903 CGCTTGAGGGGCGGCGG 40919
|||||| | || || ||
Sbjct 5389 CGCTTGCGTGGTGGAGG 5373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515208361076080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |