Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq990 120 3e-22 seq928 102 7e-17 >seq990 Length=11377 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| ||||||||||||||||| || | ||||| |||||| ||||| Sbjct 10533 GTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTG 10474 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| | || | |||||||| || ||||| || ||||| || ||| ||||| Sbjct 10473 TTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTT 10414 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | |||| |||||| | ||| ||||| | || | ||||||||||| Sbjct 10413 CGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGT 10354 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| |||||||| Sbjct 10353 CAGTGTCTTGACAAAGATCTGCAT 10330 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| |||||||||||||| ||||||| |||||| ||| ||||| || || || ||| | Sbjct 10293 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAA 10234 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || || |||||||| ||||| || || ||||||||| ||| || || || | Sbjct 10233 GATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTCTTGAATCTTGCTCTTGACATT 10174 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 |||| ||||||| ||||||||||| || | || |||||||| Sbjct 10173 ATCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 10126 >seq928 Length=40960 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||||||| |||||| | ||| || |||||| |||| Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||| ||||||||||| || ||||||||||||||| || || || || | || Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCT 344 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||| | ||||||||||| || | || ||||| || || || || || || Sbjct 343 ATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821501460636