Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq990 131 2e-25
>seq990
Length=11377
Score = 131 bits (144), Expect = 2e-25
Identities = 171/234 (73%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
||||| || || | | ||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 11018 TATTGACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAG 10959
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| | || |||| |||| || | ||||| || ||||| || | || |||||||||
Sbjct 10958 TCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCT 10899
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | || |||||||| | ||| | || | | ||| | | | ||| ||||||||
Sbjct 10898 GGAGGTATGCCCTCCTTGT-CTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGA 10840
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || || | |||||||| ||||| || || || || || ||||| |||||
Sbjct 10839 TTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 105 bits (116), Expect = 8e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| || ||||| || ||||| ||||| ||||| || | || || | | |
Sbjct 10773 ACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCC 10714
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || || ||||| || ||||| || |||| || ||||| | ||| | | ||| ||
Sbjct 10713 ATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTT 10654
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
||| ||| | || | | ||| | | | ||| || || ||||| || || | ||||
Sbjct 10653 GTCT-TGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGA 10595
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||||| || || || || ||||||||||||||
Sbjct 10594 TGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 102 bits (112), Expect = 9e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
|| || || |||||||| ||||| |||| || || || | || || ||||| || |||
Sbjct 10526 GTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCA 10467
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
||||| || | ||||||||||| | || | | ||| || || |||||| |||
Sbjct 10466 GCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTC 10407
Query 43107 AGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165
| ||| | | | |||||| ||| || || || | |||||||||||||| || || ||
Sbjct 10406 A-CGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGT 10348
Query 43166 CTTTACAAAGATTTGCAT 43183
||| |||||||| |||||
Sbjct 10347 CTTGACAAAGATCTGCAT 10330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571805570387240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |