Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq990 96.9 3e-15 >seq990 Length=11377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || |||||||||||||| ||||||||||||||| |||| ||| | || || | Sbjct 10309 CAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGA 10250 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| || |||||||| |||| || || || || ||||| | ||| |||||||| Sbjct 10249 GTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTC 10195 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| ||||| ||||||||||| |||||||| || | | |||| ||| Sbjct 10994 ACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCC 10935 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || || ||||| || || | ||| ||||| ||||| | ||||||||||| | Sbjct 10934 AATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGA 10875 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| | || | || | | || | || || || | ||| || ||||| Sbjct 10874 ATCTTCGACTTCA-CGTTGTCAATCGTATCGCTCGATTCGACTTCTAGGGTGATGGTCTT 10816 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || ||||| || || ||||| ||||| Sbjct 10815 GCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067096390343