Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1295 444 5e-120 seq990 91.5 1e-13 >seq1295 Length=44835 Score = 444 bits (492), Expect = 5e-120 Identities = 1030/1533 (67%), Gaps = 28/1533 (2%) Strand=Plus/Plus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| ||||| || |||||||| | | || || || ||||||||| || ||| ||| Sbjct 16510 GGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACG 16569 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 | |||||| |||||||| |||| ||||| | ||||| || || ||||| ||||||| Sbjct 16570 GCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCA 16629 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGC--ATCGACCAGTC 22629 ||| | ||||| | | ||||||| || ||| || |||||| ||| |||||| Sbjct 16630 CCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCCTTGAGTGAATC--CCAGTC 16687 Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 ||| ||||||| |||||||| | ||||||| |||||||||| | || || | Sbjct 16688 CCAGAGATCGGTTGGCGTCAC---GCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGAC 16744 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTC 22749 ||| ||| |||| || || || ||||| | | | || ||||||||| ||||| Sbjct 16745 AGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTC 16804 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGC 22808 |||||| |||| ||| || ||||||||||| | |||| | || | || || Sbjct 16805 CAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGC-CGTCTTGCTTCGGGAG 16863 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACC-CTGAACGCCTATACCG 22867 ||| ||||||| || | | ||| || || |||| || |||| | || | || Sbjct 16864 AGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGA-CACCCAAGCCA 16922 Query 22868 ATCGGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAAT 22925 ||||| |||| | ||| | ||| | | || |||| ||||| || || Sbjct 16923 ATCGGGCGGTGGCGTAAATTG--CTCTTGCGAGCTTCTGGCACGGGATAATGGTTGATAT 16980 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 |||| | ||||||||||| | || || | || || | | || | Sbjct 16981 CGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAAT 17040 Query 22986 CGTAAACGCCCGATTGT--ACAACAAACT-TGTTG--ACGGCGATCGAGGCAAGATTGCA 23040 |||| | | | ||| | | | | | | ||| | | || | || ||||||||||| Sbjct 17041 TGTAA-CTCTC-ATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCA 17098 Query 23041 TACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTT 23100 || || ||||| || || |||||||| | ||| || || || || ||| | | Sbjct 17099 GACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCG 17158 Query 23101 TATCGTGCCCAAATTGCTCTGGTTGCTTTTTC-GATTGCACGAATCCTTGTAGAGCATGT 23159 || || || | || |||||||| ||||| | ||||| | |||||| ||| |||| Sbjct 17159 AATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCA-GCATCCTTATAGCACATGA 17217 Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAA 23219 | || || || ||||| || | ||||| ||| || ||| | |||| || | | Sbjct 17218 AGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTCTGCGCACGCA 17277 Query 23220 CACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCA 23278 || ||| | || | | || || ||||| | || ||| | || || || | | Sbjct 17278 CA-GTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTCGAACTTTTCC 17336 Query 23279 CCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTC 23337 || || ||| || || ||||| || ||| ||||||||| | | |||| | || Sbjct 17337 CCATACACA-TCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTT 17395 Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 | || || ||| |||| || | || || ||||| || |||||||| || ||||| || Sbjct 17396 CTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGC 17455 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457 || || || |||||||| |||||| || || | ||| || | ||||||||| Sbjct 17456 ACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATG 17515 Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 ||||||||| || || | |||||| || || || | ||| ||||| || |||||||| || Sbjct 17516 CCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATA 17575 Query 23518 ACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTAC 23577 || || ||||||||||| || | ||||| || || | ||||| || | || | Sbjct 17576 CCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGT 17635 Query 23578 GCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637 ||| | | | ||| ||| |||| |||| | ||| || | || |||||| || || | Sbjct 17636 GCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTACATTGAGACCTATACCACCAGC 17695 Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697 || || ||||| |||||| |||||||||||| || ||||||||||| |||||||| Sbjct 17696 ATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTC 17755 Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757 || | | | ||||||||| |||| || ||| || || || ||||| |||||| Sbjct 17756 CTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATGGTGTGCCGGCCATGAACAG 17815 Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGC 23817 || || || || || ||||| |||||||| || ||||| || ||||| || || Sbjct 17816 GGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGC 17875 Query 23818 ATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 || ||||| || ||||||||||| | || || ||||| ||||||| ||| |||||||| Sbjct 17876 CTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTC 17935 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | |||| |||| | | |||||||| |||| | || || || |||||||| Sbjct 17936 TGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970 | ||| || ||||| ||||| | ||| ||||| Sbjct 17996 TTGATAATTGAAGTCCCGATCATACACGATGGC 18028 >seq990 Length=11377 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| |||||||| ||||| | || ||||| ||||| Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || ||| || || || || | || || |||||| Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||||||| | || || Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGA 10484 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || ||||| |||| || || |||| |||| |||| | ||||| Sbjct 10126 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGAGC 10185 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||||| | || || || ||||| || || || ||||| ||||| Sbjct 10186 AAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCAAG 10245 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 || | ||||| ||| ||||||| || ||||||||||| || || |||||| Sbjct 10246 CAACTCGAAGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGCACGCTTCAT 10305 Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| | ||| | || |||| Sbjct 10306 CTTGTACTGCGCCTGCGTGGTGGTA 10330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757022189360