Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 444 5e-120
seq990 91.5 1e-13
>seq1295
Length=44835
Score = 444 bits (492), Expect = 5e-120
Identities = 1030/1533 (67%), Gaps = 28/1533 (2%)
Strand=Plus/Plus
Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511
|||| ||||| || |||||||| | | || || || ||||||||| || ||| |||
Sbjct 16510 GGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACG 16569
Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571
| |||||| |||||||| |||| ||||| | ||||| || || ||||| |||||||
Sbjct 16570 GCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCA 16629
Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGC--ATCGACCAGTC 22629
||| | ||||| | | ||||||| || ||| || |||||| ||| ||||||
Sbjct 16630 CCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCCTTGAGTGAATC--CCAGTC 16687
Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689
||| ||||||| |||||||| | ||||||| |||||||||| | || || |
Sbjct 16688 CCAGAGATCGGTTGGCGTCAC---GCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGAC 16744
Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTC 22749
||| ||| |||| || || || ||||| | | | || ||||||||| |||||
Sbjct 16745 AGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTC 16804
Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGC 22808
|||||| |||| ||| || ||||||||||| | |||| | || | || ||
Sbjct 16805 CAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGC-CGTCTTGCTTCGGGAG 16863
Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACC-CTGAACGCCTATACCG 22867
||| ||||||| || | | ||| || || |||| || |||| | || | ||
Sbjct 16864 AGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGA-CACCCAAGCCA 16922
Query 22868 ATCGGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAAT 22925
||||| |||| | ||| | ||| | | || |||| ||||| || ||
Sbjct 16923 ATCGGGCGGTGGCGTAAATTG--CTCTTGCGAGCTTCTGGCACGGGATAATGGTTGATAT 16980
Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985
|||| | ||||||||||| | || || | || || | | || |
Sbjct 16981 CGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAAT 17040
Query 22986 CGTAAACGCCCGATTGT--ACAACAAACT-TGTTG--ACGGCGATCGAGGCAAGATTGCA 23040
|||| | | | ||| | | | | | | ||| | | || | || |||||||||||
Sbjct 17041 TGTAA-CTCTC-ATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCA 17098
Query 23041 TACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTT 23100
|| || ||||| || || |||||||| | ||| || || || || ||| | |
Sbjct 17099 GACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCG 17158
Query 23101 TATCGTGCCCAAATTGCTCTGGTTGCTTTTTC-GATTGCACGAATCCTTGTAGAGCATGT 23159
|| || || | || |||||||| ||||| | ||||| | |||||| ||| ||||
Sbjct 17159 AATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCA-GCATCCTTATAGCACATGA 17217
Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAA 23219
| || || || ||||| || | ||||| ||| || ||| | |||| || | |
Sbjct 17218 AGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTCTGCGCACGCA 17277
Query 23220 CACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCA 23278
|| ||| | || | | || || ||||| | || ||| | || || || | |
Sbjct 17278 CA-GTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTCGAACTTTTCC 17336
Query 23279 CCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTC 23337
|| || ||| || || ||||| || ||| ||||||||| | | |||| | ||
Sbjct 17337 CCATACACA-TCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTT 17395
Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397
| || || ||| |||| || | || || ||||| || |||||||| || ||||| ||
Sbjct 17396 CTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGC 17455
Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457
|| || || |||||||| |||||| || || | ||| || | |||||||||
Sbjct 17456 ACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATG 17515
Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517
||||||||| || || | |||||| || || || | ||| ||||| || |||||||| ||
Sbjct 17516 CCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATA 17575
Query 23518 ACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTAC 23577
|| || ||||||||||| || | ||||| || || | ||||| || | || |
Sbjct 17576 CCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGT 17635
Query 23578 GCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637
||| | | | ||| ||| |||| |||| | ||| || | || |||||| || || |
Sbjct 17636 GCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTACATTGAGACCTATACCACCAGC 17695
Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697
|| || ||||| |||||| |||||||||||| || ||||||||||| ||||||||
Sbjct 17696 ATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTC 17755
Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757
|| | | | ||||||||| |||| || ||| || || || ||||| ||||||
Sbjct 17756 CTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATGGTGTGCCGGCCATGAACAG 17815
Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGC 23817
|| || || || || ||||| |||||||| || ||||| || ||||| || ||
Sbjct 17816 GGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGC 17875
Query 23818 ATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877
|| ||||| || ||||||||||| | || || ||||| ||||||| ||| ||||||||
Sbjct 17876 CTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTC 17935
Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937
| | |||| |||| | | |||||||| |||| | || || || ||||||||
Sbjct 17936 TGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995
Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970
| ||| || ||||| ||||| | ||| |||||
Sbjct 17996 TTGATAATTGAAGTCCCGATCATACACGATGGC 18028
>seq990
Length=11377
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| |||||||| ||||| | || ||||| |||||
Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || ||| || ||| || || || || | || || ||||||
Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| | || ||||||||||||||| | || ||
Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGA 10484
Score = 82.4 bits (90), Expect = 7e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || ||||| |||| || || |||| |||| |||| | |||||
Sbjct 10126 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGAGC 10185
Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336
| || ||||||||||| | || || || ||||| || || || ||||| |||||
Sbjct 10186 AAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCAAG 10245
Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396
|| | ||||| ||| ||||||| || ||||||||||| || || ||||||
Sbjct 10246 CAACTCGAAGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGCACGCTTCAT 10305
Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| | ||| | || ||||
Sbjct 10306 CTTGTACTGCGCCTGCGTGGTGGTA 10330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445757022189360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |