Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq959 95.1 2e-14 seq1177 86.0 1e-11 >seq959 Length=28360 Score = 95.1 bits (104), Expect = 2e-14 Identities = 288/439 (66%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| || || || || || || || ||||| | | | |||||||||||||||||| Sbjct 16032 GTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGG 16091 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || | ||| | |||| ||||| |||| ||||| ||| | ||||| | || Sbjct 16092 CTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGAT 16151 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || || | || ||||| || || |||| || | || | ||| | Sbjct 16152 GAGGGCATGCACACAGACTTCGCCTGTCTGCTCTTTTCCCACC-TTCGCAACAAGCCCGA 16210 Query 102098 TCAAGAGAAAGGATTCTTGAA-ATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 || ||| | | || || |||||||||||||| |||||| | || || | Sbjct 16211 TCGGGAGCTGG---TGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGT 16267 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 |||| || ||||||| | || | || ||||||| ||| | ||| |||| ||||| Sbjct 16268 GACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACAT 16327 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAAT-GGGACTAGAAAAGCACTATAATGTTA 102275 || |||||||| ||| ||| || | | | || | || | | | || || | | Sbjct 16328 CGAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAG-CAGGTATTACAACGCCA 16386 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 ||||||| || |||||||| || || || | | | |||||||| || ||||| | Sbjct 16387 CCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGA 16446 Query 102336 AGAGAGTCGCCGAGTATCA 102354 ||||||||| || ||||| Sbjct 16447 AGAGAGTCGGTGATTATCA 16465 >seq1177 Length=120006 Score = 86.0 bits (94), Expect = 1e-11 Identities = 196/292 (67%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| ||| ||||| |||||| | | |||||| | || | | || || | Sbjct 106122 ATTTGGGACGGTAATGCGTCGCGAGCCTACTTGGACTCTGTCGGCCTGTCACATCGAAAA 106063 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||| | || ||| | ||||| ||||| ||||| ||||| ||||| |||||| | Sbjct 106062 GAAGGCGATCTTGGTCCCATCTACGGTTTCCAGTGGCGACATTTCGGTGCAGAATATCGT 106003 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAAT---ATACTAAAG 35509 ||| | |||||| |||||||| | |||||||| || | || | |||| Sbjct 106002 GATTGTCACGCGAATTATAACGGAAAGGGAGTGGATCAATTAGCAGACGTGATTCGAAAG 105943 Query 35510 ACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGAT 35569 |||| || ||||| | || | || || || | | || ||||| ||| ||| Sbjct 105942 ---CTGAAGGAGAATCCGTACGACCGCAGAATCATCCTTAGTGCTTGGAACCCTGCGGAC 105886 Query 35570 CTTCACCTTA--TGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 || |||| | |||||||||| ||||| |||||| |||||| || || || Sbjct 105885 CT--ACCTAAGATGGCTCTTCCGCCATGTCACATGTTTGCTCAGTTCTACGT 105836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562661167265