Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 129 7e-25
seq959 95.1 2e-14
>seq1295
Length=44835
Score = 129 bits (142), Expect = 7e-25
Identities = 420/645 (65%), Gaps = 12/645 (2%)
Strand=Plus/Plus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| ||||| | |||||||||||| | ||| | || | || ||| |||||||| ||
Sbjct 17357 AGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAA 17416
Query 63281 GAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339
| || || |||||||| || || ||| || || | | | ||| || || ||
Sbjct 17417 CAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCCAT 17475
Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399
||||| || |||||||| | | || || | ||||||||| || | || ||||
Sbjct 17476 GGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGG 17535
Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459
| | | || || || ||||| || || ||||| | || | || ||||| || || |
Sbjct 17536 CAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATA 17595
Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519
| | | ||| || | | |||||||| | ||||| || || ||||| ||
Sbjct 17596 CACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTG 17655
Query 63520 TGGCACGAAT----ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575
| || ||||| ||| |||| |||||||| || || || | || ||||| |
Sbjct 17656 TTGCGCGAATGCGGTGTAC--ATTG--AGACCTATACCACCAGCATTCTTTGAGATCATG 17711
Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635
|||||| ||| | |||||||| ||||| || || || || || |||||| || |
Sbjct 17712 GCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAG 17771
Query 63636 AAACAGCTAGACATTTGGTGACGA-GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694
||||| || || |||| | || | || || || | || | ||| || ||||| ||
Sbjct 17772 AAACATGAAGCCAATTGG-GCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATG 17830
Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754
|| || | || | || | || ||||| ||||| || || | || || ||
Sbjct 17831 AGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCC 17890
Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814
|| || || || || |||||||| | |||||| || ||||| || ||||||| ||
Sbjct 17891 GTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCGTC 17950
Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859
||| ||| | || || ||| | ||| || || ||||||||
Sbjct 17951 AATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995
>seq959
Length=28360
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631
||| | || ||| ||||| || ||||| ||||| || | ||| | ||||| ||
Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128
Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691
||| || || |||||||| || ||||||||||| ||||| || ||||| ||||| || |
Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068
Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726
|| ||||| || || ||||| || || || ||||
Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAA 16033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629804350212240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |