Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1295 129 7e-25 seq959 95.1 2e-14 >seq1295 Length=44835 Score = 129 bits (142), Expect = 7e-25 Identities = 420/645 (65%), Gaps = 12/645 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| ||||| | |||||||||||| | ||| | || | || ||| |||||||| || Sbjct 17357 AGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAA 17416 Query 63281 GAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 | || || |||||||| || || ||| || || | | | ||| || || || Sbjct 17417 CAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCCAT 17475 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 ||||| || |||||||| | | || || | ||||||||| || | || |||| Sbjct 17476 GGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGG 17535 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | || || || ||||| || || ||||| | || | || ||||| || || | Sbjct 17536 CAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATA 17595 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | | | ||| || | | |||||||| | ||||| || || ||||| || Sbjct 17596 CACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTG 17655 Query 63520 TGGCACGAAT----ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 | || ||||| ||| |||| |||||||| || || || | || ||||| | Sbjct 17656 TTGCGCGAATGCGGTGTAC--ATTG--AGACCTATACCACCAGCATTCTTTGAGATCATG 17711 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 |||||| ||| | |||||||| ||||| || || || || || |||||| || | Sbjct 17712 GCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAG 17771 Query 63636 AAACAGCTAGACATTTGGTGACGA-GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 ||||| || || |||| | || | || || || | || | ||| || ||||| || Sbjct 17772 AAACATGAAGCCAATTGG-GCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATG 17830 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 || || | || | || | || ||||| ||||| || || | || || || Sbjct 17831 AGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCC 17890 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 || || || || || |||||||| | |||||| || ||||| || ||||||| || Sbjct 17891 GTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCGTC 17950 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 ||| ||| | || || ||| | ||| || || |||||||| Sbjct 17951 AATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995 >seq959 Length=28360 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 ||| | || ||| ||||| || ||||| ||||| || | ||| | ||||| || Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 ||| || || |||||||| || ||||||||||| ||||| || ||||| ||||| || | Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 || ||||| || || ||||| || || || |||| Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAA 16033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804350212240