Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq990 87.8 2e-12 >seq990 Length=11377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||| ||||||||||| || ||||||| |||| |||||||| || Sbjct 10304 TGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGTTGC 10245 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || ||||||| ||||||||||| ||||| || ||||| ||||| ||| | || Sbjct 10244 TTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTC-TTGAATCTT 10186 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||| | | ||| ||||| | || | ||||||||||| Sbjct 10185 GCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 10126 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | ||| |||||||||||||| || || Sbjct 10556 CCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAG 10497 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || |||||||| ||||| | |||| || ||||| || ||||| Sbjct 10496 AGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 10437 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || ||||| || |||||| ||| | | || | ||||||| | ||| ||| Sbjct 10436 ATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACC 10377 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || |||||||||| || || || || || |||||| Sbjct 10376 TCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCATA 10329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053564053600