Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1295 111 2e-19 seq959 111 2e-19 >seq1295 Length=44835 Score = 111 bits (122), Expect = 2e-19 Identities = 415/641 (65%), Gaps = 16/641 (2%) Strand=Plus/Plus Query 79839 TTCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 |||||||||| ||| | | | ||||||| || || | ||||| | | ||||| Sbjct 17303 TTCGTATTGTTCGTAGAGAGCC--TCGAACTTTTCCCCATACACATCAGCAAGGCCAGGG 17360 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956 ||||||| ||||||||||| | ||| | | | || || |||||||| || | Sbjct 17361 CATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAG 17420 Query 79957 TCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015 || || |||||||| || || ||| || || | | | || || || || || Sbjct 17421 TCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTT 17479 Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075 ||| || |||||||| | | || || | ||||||||| || | || ||||| | Sbjct 17480 CTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAA 17539 Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135 | || || || ||||| || || ||||| | || | || ||||| || || || | Sbjct 17540 GGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACG 17599 Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195 | ||| || | | || || || || ||||| || || ||||| || | || Sbjct 17600 AAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGC 17659 Query 80196 ACGAAT----ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 ||||| ||| |||| |||||||| || || || | || ||||| | |||| Sbjct 17660 GCGAATGCGGTGTAC--ATTG--AGACCTATACCACCAGCATTCTTTGAGATCATGGCGC 17715 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 || ||| | || ||||| |||||||| || || || || |||||| || | |||| Sbjct 17716 ATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAAC 17775 Query 80312 AGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 | || || |||| | || || || || | || | ||| || ||||| || || Sbjct 17776 ATGAAGCCAATTGG-GCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTG 17834 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || | || | |||| || ||||| ||||| || || | || || || || Sbjct 17835 AAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGT 17894 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || ||||| |||||||| | |||||| || ||||| || Sbjct 17895 ATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTC 17935 >seq959 Length=28360 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 ||| | || ||| ||||| || ||||| ||||| || | ||| || |||||||| Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 ||| || || |||||||| || ||||||||||| ||||| || ||||| || || || | Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 ||| ||||| || || ||||| ||||| || ||||| || Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAG 16029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253689420120