Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1295 107 3e-18 seq959 100 4e-16 >seq1295 Length=44835 Score = 107 bits (118), Expect = 3e-18 Identities = 379/585 (65%), Gaps = 8/585 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| ||||| | |||||||||||| | ||| | | | | || |||||||| Sbjct 17355 CCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATG 17414 Query 72034 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || | || || |||||||| || || ||| || || | | | || || || || Sbjct 17415 AACAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCC 17473 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||| || |||||||| | | || || | ||||||||| || | || || Sbjct 17474 ATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGAT 17533 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 ||| | | || || || ||||| || || ||||| | || | || ||||| || || Sbjct 17534 GGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTA 17593 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || | | ||| || | | || || || | ||||| || || ||||| || Sbjct 17594 TACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCC 17653 Query 72273 ACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | || ||||| || |||| |||||||| || || || | || ||||| | Sbjct 17654 TGTTGCGCGAATGCGGTGTACATTG--AGACCTATACCACCAGCATTCTTTGAGATCATG 17711 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 |||||| ||| | || ||||| |||||||| ||||| || ||| |||||| || | Sbjct 17712 GCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAG 17771 Query 72391 AAACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 ||||| || || |||| | || || || || | || | ||| || ||||| || Sbjct 17772 AAACATGAAGCCAATTGG-GCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATG 17830 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 || || | || | |||| || ||||| ||||| || || | || || || Sbjct 17831 AGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCC 17890 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 ||||| || ||||| |||||||| | ||| || || ||||| || Sbjct 17891 GTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTC 17935 >seq959 Length=28360 Score = 100 bits (110), Expect = 4e-16 Identities = 367/571 (64%), Gaps = 14/571 (2%) Strand=Plus/Minus Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 ||| | || ||| ||||| || ||||| |||||||| | ||| | |||||||| Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 ||| || || |||||||| || ||||||||||| ||||| || || || || || || | Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 ||| ||||| || || ||||| || || || |||| || | || | | | | Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATT 16008 Query 42235 GTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | || ||||| | |||||||| |||||||| | || || || | || Sbjct 16007 CTTATCGCTAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTC 15948 Query 42292 TATGGCATTAAAGAGATA-Gt---ttttttCATTACTATCTTTAACATATGTATCGATCA 42347 ||||| || || ||||| || || |||| | || | | || || ||||| | Sbjct 15947 GATGGCGTTGAATAGATACGTGCGTTGTTTCGGT----TCGCTGATGTAGGTGTCGATGA 15892 Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407 ||| || | || || || || || || || ||||| || |||||||| || | Sbjct 15891 GCAGAGAGTAAGTCTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGC 15832 Query 42408 TGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTC 42467 || |||| | || || || | | ||||| || | | || ||||| || || | Sbjct 15831 GTGCTTCGGGTATTTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCC 15772 Query 42468 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA 42527 |||| || |||||||| || | ||||| || || | ||||| | | Sbjct 15771 CGTCTGATGCCGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCA 15712 Query 42528 ---ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 || ||||| |||| | |||||| || | ||| | || || ||||||| || | Sbjct 15711 GGCGCTTGTTCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGG 15652 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | ||||| ||||| || ||||| | ||| || Sbjct 15651 AGGCTTCCGCCTTCTTGTACATTTGCCATAT 15621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125080909080