Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 107 3e-18
seq959 100 4e-16
>seq1295
Length=44835
Score = 107 bits (118), Expect = 3e-18
Identities = 379/585 (65%), Gaps = 8/585 (1%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| ||||| | |||||||||||| | ||| | | | | || ||||||||
Sbjct 17355 CCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATG 17414
Query 72034 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092
|| | || || |||||||| || || ||| || || | | | || || || ||
Sbjct 17415 AACAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCC 17473
Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152
||||| || |||||||| | | || || | ||||||||| || | || ||
Sbjct 17474 ATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGAT 17533
Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212
||| | | || || || ||||| || || ||||| | || | || ||||| || ||
Sbjct 17534 GGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTA 17593
Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272
|| | | ||| || | | || || || | ||||| || || ||||| ||
Sbjct 17594 TACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCC 17653
Query 72273 ACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330
| || ||||| || |||| |||||||| || || || | || ||||| |
Sbjct 17654 TGTTGCGCGAATGCGGTGTACATTG--AGACCTATACCACCAGCATTCTTTGAGATCATG 17711
Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390
|||||| ||| | || ||||| |||||||| ||||| || ||| |||||| || |
Sbjct 17712 GCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAG 17771
Query 72391 AAACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449
||||| || || |||| | || || || || | || | ||| || ||||| ||
Sbjct 17772 AAACATGAAGCCAATTGG-GCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATG 17830
Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509
|| || | || | |||| || ||||| ||||| || || | || || ||
Sbjct 17831 AGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCC 17890
Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
||||| || ||||| |||||||| | ||| || || ||||| ||
Sbjct 17891 GTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTC 17935
>seq959
Length=28360
Score = 100 bits (110), Expect = 4e-16
Identities = 367/571 (64%), Gaps = 14/571 (2%)
Strand=Plus/Minus
Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114
||| | || ||| ||||| || ||||| |||||||| | ||| | ||||||||
Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128
Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174
||| || || |||||||| || ||||||||||| ||||| || || || || || || |
Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068
Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234
||| ||||| || || ||||| || || || |||| || | || | | | |
Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATT 16008
Query 42235 GTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291
| || ||||| | |||||||| |||||||| | || || || | ||
Sbjct 16007 CTTATCGCTAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTC 15948
Query 42292 TATGGCATTAAAGAGATA-Gt---ttttttCATTACTATCTTTAACATATGTATCGATCA 42347
||||| || || ||||| || || |||| | || | | || || ||||| |
Sbjct 15947 GATGGCGTTGAATAGATACGTGCGTTGTTTCGGT----TCGCTGATGTAGGTGTCGATGA 15892
Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407
||| || | || || || || || || || ||||| || |||||||| || |
Sbjct 15891 GCAGAGAGTAAGTCTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGC 15832
Query 42408 TGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTC 42467
|| |||| | || || || | | ||||| || | | || ||||| || || |
Sbjct 15831 GTGCTTCGGGTATTTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCC 15772
Query 42468 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA 42527
|||| || |||||||| || | ||||| || || | ||||| | |
Sbjct 15771 CGTCTGATGCCGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCA 15712
Query 42528 ---ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584
|| ||||| |||| | |||||| || | ||| | || || ||||||| || |
Sbjct 15711 GGCGCTTGTTCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGG 15652
Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGAT 42615
| ||||| ||||| || ||||| | ||| ||
Sbjct 15651 AGGCTTCCGCCTTCTTGTACATTTGCCATAT 15621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671125080909080
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