Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq959 273 3e-68 >seq959 Length=28360 Score = 273 bits (302), Expect = 3e-68 Identities = 584/860 (68%), Gaps = 27/860 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| | |||||||| ||||||| ||| ||| ||||||| Sbjct 15621 ATATGGCAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATCTT 15680 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTAT--AT 125136 || || || || | || ||| | | || ||| ||| ||| |||| |||| | || Sbjct 15681 TCAAAAGATTTGCATGACTGGAACAAGCGCCTGAATGA---TGA-CGAGCGTTTCTTCAT 15736 Query 125137 CGCACATTT--TGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 | | ||| | | ||||| ||||| | || || || || |||||||| || || || || Sbjct 15737 CTCTCATGTCCTCGCCTTTTTTGCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGA 15796 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 |||||||| ||| || || || || | ||||| ||||| ||||| |||| Sbjct 15797 G-CGATTCTCAGCCGAGGTGCAAATACCCGAAGCACGCTGCTTCTACGGCTTCCAGATCA 15855 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| ||||| | ||||| || | |||||| || || |||| ||||| |||| | Sbjct 15856 TGATGGAGAATATCCACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGAAC 15915 Query 125314 CGCAACGTAAACACATG---CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 || ||| ||| || | || || ||||| ||||||| | || | || |||| | Sbjct 15916 CGAAAC---AACGCACGTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAAGA 15972 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| | | || ||||| || | || || ||| || | | || | Sbjct 15973 AGGCGGATTGGGCGCTGCGATGGATTAGCGATAAGAATTCGACGTTCGGCTGTCGTCTCG 16032 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || |||||||| ||||||||||| ||||| || | || || |||| || |||| Sbjct 16033 TTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGC 16092 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||| ||||| || ||||||||||| ||||| |||||| |||| || || || | Sbjct 16093 TCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATG 16152 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 ||||| | ||| ||||| ||| ||| || ||| | || || || | || | Sbjct 16153 AGGGCATGCACACAGACTTCGCCTGTCTGCTCTTTTCCCAC---CTTCGCAACAAG-CCC 16208 Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 |||| | | | ||| | | ||| | || || ||||| | || ||| | |||| Sbjct 16209 GATCGGGAGCT-----GGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGT 16263 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAG 125729 | | || || || | || ||| ||| | | |||||||||| ||| || |||||| | Sbjct 16264 TCGTGACAGACTCATTGCCTGTC-GCACTACTAGGCATGAACTCCAACCTCATGTGCCAA 16322 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAAC 125789 ||||| ||||||||||| ||||| |||||| || | | | ||| | ||||||| Sbjct 16323 TACATCGAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTATTACAAC 16382 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 |||| || || ||||| |||||| | ||| || | | ||| |||||||| || || Sbjct 16383 GCCACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTT 16442 Query 125850 GAGAAGAAGGTCAGCGAGTA 125869 ||||||| ||| | || || Sbjct 16443 GAGAAGAGAGTCGGTGATTA 16462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043609967080