Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq990 87.8 1e-12 >seq990 Length=11377 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33139 TTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATC 33198 || |||||| | | |||| ||||||||||| || || || || |||||||| || Sbjct 11016 TTGACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTC 10957 Query 33199 AGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 ||||| | ||| ||||||||||| || || ||||| | |||||||| | Sbjct 10956 TGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGG 10897 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || || |||| | || || | | |||||| ||| | | || Sbjct 10896 AGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTC 10837 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || || |||||||| ||||| || ||||| Sbjct 10836 GACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318771061373334