Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq990 87.8 2e-12 >seq990 Length=11377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| |||||||| || | || || || | ||||| || ||||| ||||| ||||| Sbjct 10485 ATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTT 10426 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| | || ||| | ||| ||||| | || || |||| ||||| Sbjct 10425 ATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGAT 10366 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || || || || |||||||||||||| Sbjct 10365 GGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 |||||||| | ||| || ||||||| |||| | ||| || || || || ||| | ||| Sbjct 10292 TCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAG 10233 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | ||||||||||||||| |||||||| ||||| | ||| || |||||| Sbjct 10232 ATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTCTTGAATCTTGCTCTTGACATTA 10173 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||| ||||| | ||||| || | |||||||| || || || Sbjct 10172 TCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 10126 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || || | ||||||||||| ||||| |||||||| || || || ||| Sbjct 10940 TCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTG 10881 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | ||| || | ||| ||| | | | || || || | ||||| || | ||||| Sbjct 10880 TCTTGAATCTTCGACTTCACGTTGTCAATCGTATC-GCTCGATTCGACTTCTAGGGTGAT 10822 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || |||||||| || ||||||||||| Sbjct 10821 GGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281769073880