Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1295 118 1e-21 seq959 109 7e-19 >seq1295 Length=44835 Score = 118 bits (130), Expect = 1e-21 Identities = 419/647 (65%), Gaps = 12/647 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| ||||| | |||||||||||| | ||| | || | || ||| |||||||| Sbjct 17355 CCAGGGCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATG 17414 Query 63228 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || | || || |||||||| || || ||| || || | | | ||| || || || Sbjct 17415 AACAAGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCC 17473 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||| || |||||||| | | || || | ||||||||| || | || || Sbjct 17474 ATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGAT 17533 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 ||| | | || || || ||||| || || ||||| | || | || ||||| || || Sbjct 17534 GGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTA 17593 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 || | | ||| || | | |||||||| | ||||| || || ||||| || Sbjct 17594 TACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCC 17653 Query 63467 ACTGGCACGAAT----ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63522 | || ||||| ||| |||| |||||||| || || || | || ||||| | Sbjct 17654 TGTTGCGCGAATGCGGTGTAC--ATTG--AGACCTATACCACCAGCATTCTTTGAGATCA 17709 Query 63523 ATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTA 63582 |||||| ||| | |||||||| || ||||| || || || || |||||| || | Sbjct 17710 TGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCA 17769 Query 63583 GAAAACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63641 ||||| || || |||| | || || || || | || | ||| || ||||| Sbjct 17770 AGAAACATGAAGCCAATTGG-GCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCA 17828 Query 63642 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63701 || || || | || | || | || ||||| ||||| || || | || || || Sbjct 17829 TGAGTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCG 17888 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 || || || || || |||||||| | |||||| || ||||| || | || || | Sbjct 17889 CCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCG 17948 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808 | ||| ||| | || || ||| | ||| || || |||||||| Sbjct 17949 TCAATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995 >seq959 Length=28360 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 ||| | || ||| ||||| || ||||| ||||| || | ||| || |||||||| Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 ||| || || |||||||| || ||||||||||| ||||| || ||||| ||||| || | Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 ||| ||||| || || ||||| || || || |||| Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAA 16033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934094748280