Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq959 120 3e-22 seq990 104 2e-17 >seq959 Length=28360 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 119661 TTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTT 119720 || ||||| ||||| ||||||||| | | || ||||| | ||| || || || || || Sbjct 16447 TTCTCAAAGAAATTGGTCTTGCCCGCCAACGAGATGTTCTCCATGAAGTCAAATGGGTTG 16388 Query 119721 GCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCG 119780 | | |||| ||| | || || ||| | | ||| || || ||||| |||||||||||| Sbjct 16387 GTGGCGTTGTAATACCTGCTGTTGCCGAGCGCGAGCAGTAGGCGATCGGCCACAAACTCG 16328 Query 119781 ATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGT 119839 ||||||| ||||||| | ||| || |||||||| | | ||||| || || | | || Sbjct 16327 ATGTATTGGCACATGAGGTTG-GAGTTCATGCCTAGTAGTGCGACAGGCAATGAGTCTGT 16269 Query 119840 AAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 | ||| |||||||||||| ||| ||||| Sbjct 16268 CACGAACTCCTTTTCAATGGTGACGGCTTC 16239 >seq990 Length=11377 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | || || || | ||||| | ||| | ||||||| Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || || |||||| |||||||| || || || || || ||| Sbjct 10618 GATACGATAGACAACGTGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCAA 10677 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||||| || | || |||||| ||||| ||||||| || ||||| | ||||| || Sbjct 10678 CAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAG-AACGTTGTCAGACTACAA 10736 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||||| || ||| ||| | || |||||||| Sbjct 10737 CATTCAGAAGGAAAGTACATTACACTTGGTCCTG 10770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 10162 GACACGATCGATAATGTCAAGAGCAAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAG 10221 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || |||||| ||||||||||||| | | | |||||||| ||| Sbjct 10222 CAACGCCTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTGAGCGACTACAAC 10281 Query 26949 ATTCAAAAAGA 26959 |||||||| || Sbjct 10282 ATTCAAAAGGA 10292 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||| | || || ||| | ||||| | || | || || | Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| || || || ||||| || || ||||| || || Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || |||||||| || || |||| | | | || ||||| ||| Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 10509 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||||||||||| ||| |||| || |||||| Sbjct 10510 ATTCAAAAAGAAAGTACCCTCCACCTTGTCCTG 10542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652330139760