Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1295 208 2e-48 seq959 84.2 6e-11 >seq1295 Length=44835 Score = 208 bits (230), Expect = 2e-48 Identities = 570/855 (67%), Gaps = 20/855 (2%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 ||||| || ||| | ||||||||||| | ||||| || || || | || || || Sbjct 17929 CCGCAACACATGATCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATCGAGGCTGCA 17870 Query 363514 ATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGT 363571 || || || || || || | || | | ||| ||||| || || | ||||| ||| Sbjct 17869 ATCGAGACCTACAACCTCAT--GTCGAACAAGTACTTCACTCATGCTTCACCAACCCTGT 17812 Query 363572 ACAATGCTGGAACTCGTAATCCACAGA--TGTCTTCTTGCTTTCTTC-TAAAAATGAAGG 363628 || || || || | |||| | | || |||| || |||||| | | ||||||| Sbjct 17811 TCATGGCCGGCACACC--ATCCGCCCAATTGGCTTCATG-TTTCTTGATTGACATGAAGG 17755 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || |||||||| || | |||||| || || | || || | || || ||||||| Sbjct 17754 AGGACAGTATCGAGGGCATTTATGACACTCTGAAAACATGCGCCATGATCTCAAAGAATG 17695 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCA-CAGAACAGTTACATTCGCG 363745 | || || || ||| | | || ||| | |||| ||| ||| || | ||| | | Sbjct 17694 CTGGTGGTATAGGTCT--CAATGTACACCGCATTCGCGCAACAGGGTCGT-ATATTGGTG 17638 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 ||||| ||| || || || |||| || ||||||||||| | |||| |||||| Sbjct 17637 GCACAAATGGAACTTCAAACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGC 17578 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 |||| ||||| || ||||| ||||| || || ||||| || ||||| ||||| Sbjct 17577 GGTATGTCGATCAAGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCGT 17518 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||||| || || || || || || || || || ||| || ||||| ||| | | Sbjct 17517 GGCATGCGGACATATTCTCCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAGTCC 17458 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| || || || ||||| || |||||| | | ||| || ||||| || ||||| | Sbjct 17457 GTGCTCGCGACCTTTTCTACGCGCTTTGGATCCCAGACTTGTTCATGAAACGGGTGGA-G 17399 Query 363986 CAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 ||| || | ||| | | | || || |||||||| || || ||| | ||||| | Sbjct 17398 CAGAACAGCACATGGACTTTGATGTGTCCGCACGAATGCCCTGGCCTTGCTGATGTGTAT 17339 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || || | | | ||||| |||||| | || ||| ||||| | ||| |||| Sbjct 17338 GGGGAAAAGTTCGAGGCTCTCTACGAACAATACGAACGCGAGGGTCGTGGTCGCGAGACT 17279 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 | | || ||||| ||||||| || ||| | || | || | |||||||| || ||| Sbjct 17278 GTGCGTGCGCAGAAACTATGGTACGCAATCCTCGAGGCTCAAACGGAGACAGGTACTCCC 17219 Query 364165 TATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | |||| || || ||| | ||| ||| | || ||||||||| | |||||||||| || Sbjct 17218 TTCATGTGCTATAAGGATGC-TGCAAACAGAAAATCCAACCAGAAAAACCTTGGTACCAT 17160 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || |||||| || || |||||||| || ||||| || || || ||| || || Sbjct 17159 TCGCTCTTCCAACCTGTGCACTGAGATTATGGAGTACACTGCCCCTGATGAGGTCGCTGT 17100 Query 364284 ATGTAACCTTGCGTC 364298 || || ||||| || Sbjct 17099 CTGCAATCTTGCATC 17085 >seq959 Length=28360 Score = 84.2 bits (92), Expect = 6e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGT 22494 || ||||| |||||||||||| |||||| | | || | ||| |||| ||| Sbjct 15969 AAGAAGGCGGATTGGGCGCTGCGATGGATTAGCGATAAGAATTCGACGTTCGGCTGTCGT 16028 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || |||| || || | || || ||||||||||| ||| | | || | || || Sbjct 16029 CTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTC 16088 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| ||||| |||| | ||||| ||||| || ||||| || ||| | ||| ||| Sbjct 16089 TGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGT 16148 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 |||||||| | || || || || || ||| |||| Sbjct 16149 GATGAGGGCATGCACACAGACTTCGCCTGTCTGCT 16183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303325495216106