Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq959 154 1e-32 seq1295 116 3e-21 seq990 113 4e-20 seq1047 98.7 9e-16 >seq959 Length=28360 Score = 154 bits (170), Expect = 1e-32 Identities = 313/461 (68%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 |||| |||| | ||| | || || || || ||| |||||| | || || ||| || Sbjct 16012 CGACGTTCGGCTGTCGTCTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCT 16071 Query 46202 GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 || || |||| || | |||||| || |||||||||| ||||| ||| || Sbjct 16072 CCTTCGCATCCATTTTCTGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCA 16131 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321 ||||||| || || || || |||||| |||| || ||||| || ||||| || | | Sbjct 16132 ACGAGCTTATTTCCCGTGATGAGGGCATGCACACAGACTTCGCCTGTCTGCTCTTTTCC- 16190 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 | | | | | |||||| | | || ||| |||||| ||| || || || Sbjct 16191 --CACCTTCGCAACAAGCCCGATCGGGAGCTGGTGAGGAGCATCATCACTGAAGCCGTCA 16248 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 ||||||| |||||||| | || | | || |||| | || || || ||||||||| | Sbjct 16249 CCATTGAAAAGGAGTTCGTGACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCA 16308 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGA---CCGACTGCTCGTGCAGCTTCACC 46498 | |||||| | |||||||||||||| || || || |||||||| || | || | Sbjct 16309 ACCTCATGTGCCAATACATCGAGTTTGTGGCCGATCGCCTACTGCTCGCGC-TCGGCAAC 16367 Query 46499 AGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 ||| | | ||| |||| ||| |||||||| || ||| | |||||||| ||| || Sbjct 16368 AGC--AGGTATTACAACGCCACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGG 16425 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 |||| || ||||| || || ||| | ||||| || ||| || Sbjct 16426 GCAAGACCAATTTCTTTGAGAAGAGAGTCGGTGATTATCAG 16466 >seq1295 Length=44835 Score = 116 bits (128), Expect = 3e-21 Identities = 341/515 (66%), Gaps = 14/515 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| |||||||| || | |||||||| || | ||| || ||| | || Sbjct 16512 TTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGC 16571 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || ||| | || || ||||| ||| || | |||| || || |||||| ||||||| Sbjct 16572 TCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACC 16631 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTC--CTTTAGCGTACCCCAATCCC 145235 | ||||| ||||| | ||||||| || ||||| ||| || | | |||| |||| Sbjct 16632 AGCAATGAGTTGCGGACTCCGTGCTG--TGCAATCTTCGCCTTGAGTGAATCCCAGTCCC 16689 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || ||| ||||| ||||||||||||| |||| || | |||| | ||| Sbjct 16690 AGAGATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGACAGGGG 16749 Query 145296 TGCCTTGAAAGGAACTGT-AACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCA 145352 ||| | | || | | | || || |||| | || || ||||| ||||||| Sbjct 16750 AGCC---AGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCA 16806 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 || ||| |||||| |||||| || || |||| ||| | | ||||| | Sbjct 16807 ACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGAGT 16866 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGA-GCCCCTGTATTCCCACGCCGATG 145471 || |||||||||| || | ||||||||||| | ||| ||| | |||| ||| || Sbjct 16867 CGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTG-ACACCCAAGCCAATC 16925 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGAT 145530 || || || | |||||| | | | | || | | ||||| | || ||||| Sbjct 16926 GGGCGGTGGCGTAAATTGCTCTTGCGAG-CTTCTGGCACGGGATAATGGTTGATATCGAT 16984 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAA 145565 ||| || ||||||||| | || ||||| |||| Sbjct 16985 AATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAA 17019 >seq990 Length=11377 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || | || | ||| || |||||||||||||| || Sbjct 10556 CCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAG 10497 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||| ||||| ||| | || || |||||||||||||||||| Sbjct 10496 AGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 10437 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || ||||||| || | | || | || |||| ||||| | Sbjct 10436 ATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACC 10377 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| || || || || || |||||||| Sbjct 10376 TCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | ||| | || |||||||||||||||||| |||||| Sbjct 10328 CCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 10269 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || |||||||| ||| |||| | || ||||| || |||||| Sbjct 10268 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGG 10209 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | ||||||| Sbjct 10208 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACC 10149 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| || | ||| || ||||| Sbjct 10148 TCGAGAGTGATGGTCTTGCCGGT 10126 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || |||| || ||||| ||||||||||| || | Sbjct 10784 CCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGAC 10725 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | || || || |||||||| ||| |||||| | || ||||| || || Sbjct 10724 AACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGA 10665 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| || ||| ||| | | || | ||||| | || |||| Sbjct 10664 ATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACT 10605 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| |||||||| || || || ||||| Sbjct 10604 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 >seq1047 Length=44052 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || || || | ||| | || |||||| ||||| || |||||| Sbjct 5376 CCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAG 5435 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||||||| ||| Sbjct 5436 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 5495 Query 131128 ATTCCTTCTTTGTC 131141 || || |||||||| Sbjct 5496 ATACCCTCTTTGTC 5509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002870030720