Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq959 154 1e-32
seq1295 116 3e-21
seq990 113 4e-20
seq1047 98.7 9e-16
>seq959
Length=28360
Score = 154 bits (170), Expect = 1e-32
Identities = 313/461 (68%), Gaps = 9/461 (2%)
Strand=Plus/Plus
Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201
|||| |||| | ||| | || || || || ||| |||||| | || || ||| ||
Sbjct 16012 CGACGTTCGGCTGTCGTCTCGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCT 16071
Query 46202 GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261
|| || |||| || | |||||| || |||||||||| ||||| ||| ||
Sbjct 16072 CCTTCGCATCCATTTTCTGGCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCA 16131
Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321
||||||| || || || || |||||| |||| || ||||| || ||||| || | |
Sbjct 16132 ACGAGCTTATTTCCCGTGATGAGGGCATGCACACAGACTTCGCCTGTCTGCTCTTTTCC- 16190
Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381
| | | | | |||||| | | || ||| |||||| ||| || || ||
Sbjct 16191 --CACCTTCGCAACAAGCCCGATCGGGAGCTGGTGAGGAGCATCATCACTGAAGCCGTCA 16248
Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441
||||||| |||||||| | || | | || |||| | || || || ||||||||| |
Sbjct 16249 CCATTGAAAAGGAGTTCGTGACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCA 16308
Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGA---CCGACTGCTCGTGCAGCTTCACC 46498
| |||||| | |||||||||||||| || || || |||||||| || | || |
Sbjct 16309 ACCTCATGTGCCAATACATCGAGTTTGTGGCCGATCGCCTACTGCTCGCGC-TCGGCAAC 16367
Query 46499 AGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558
||| | | ||| |||| ||| |||||||| || ||| | |||||||| ||| ||
Sbjct 16368 AGC--AGGTATTACAACGCCACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGG 16425
Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599
|||| || ||||| || || ||| | ||||| || ||| ||
Sbjct 16426 GCAAGACCAATTTCTTTGAGAAGAGAGTCGGTGATTATCAG 16466
>seq1295
Length=44835
Score = 116 bits (128), Expect = 3e-21
Identities = 341/515 (66%), Gaps = 14/515 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| |||||||| || | |||||||| || | ||| || ||| | ||
Sbjct 16512 TTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGC 16571
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| ||| | || || ||||| ||| || | |||| || || |||||| |||||||
Sbjct 16572 TCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACC 16631
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTC--CTTTAGCGTACCCCAATCCC 145235
| ||||| ||||| | ||||||| || ||||| ||| || | | |||| ||||
Sbjct 16632 AGCAATGAGTTGCGGACTCCGTGCTG--TGCAATCTTCGCCTTGAGTGAATCCCAGTCCC 16689
Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295
| || || ||| ||||| ||||||||||||| |||| || | |||| | |||
Sbjct 16690 AGAGATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCTGACAGGGG 16749
Query 145296 TGCCTTGAAAGGAACTGT-AACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCA 145352
||| | | || | | | || || |||| | || || ||||| |||||||
Sbjct 16750 AGCC---AGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCA 16806
Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412
|| ||| |||||| |||||| || || |||| ||| | | ||||| |
Sbjct 16807 ACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGAGT 16866
Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGA-GCCCCTGTATTCCCACGCCGATG 145471
|| |||||||||| || | ||||||||||| | ||| ||| | |||| ||| ||
Sbjct 16867 CGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTG-ACACCCAAGCCAATC 16925
Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGAT 145530
|| || || | |||||| | | | | || | | ||||| | || |||||
Sbjct 16926 GGGCGGTGGCGTAAATTGCTCTTGCGAG-CTTCTGGCACGGGATAATGGTTGATATCGAT 16984
Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAA 145565
||| || ||||||||| | || ||||| ||||
Sbjct 16985 AATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAA 17019
>seq990
Length=11377
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | |||||| || | || | ||| || |||||||||||||| ||
Sbjct 10556 CCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAG 10497
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||| ||||| ||| | || || ||||||||||||||||||
Sbjct 10496 AGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 10437
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || ||||| || ||||||| || | | || | || |||| ||||| |
Sbjct 10436 ATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACC 10377
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | |||||| ||||| || || || || || ||||||||
Sbjct 10376 TCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | ||| | || |||||||||||||||||| ||||||
Sbjct 10328 CCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 10269
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| || || || |||||||| ||| |||| | || ||||| || ||||||
Sbjct 10268 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGG 10209
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| || || ||||| | || | || || | |||||||
Sbjct 10208 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACC 10149
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| || | ||| || |||||
Sbjct 10148 TCGAGAGTGATGGTCTTGCCGGT 10126
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | |||||| || || |||| || ||||| ||||||||||| || |
Sbjct 10784 CCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGAC 10725
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | | || || || |||||||| ||| |||||| | || ||||| || ||
Sbjct 10724 AACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGA 10665
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || |||||||| || ||| ||| | | || | ||||| | || ||||
Sbjct 10664 ATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACT 10605
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || ||||| |||||||| || || || |||||
Sbjct 10604 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
>seq1047
Length=44052
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| ||||| || || || | ||| | || |||||| ||||| || ||||||
Sbjct 5376 CCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAG 5435
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| || |||| | ||||||||||||||| |||
Sbjct 5436 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 5495
Query 131128 ATTCCTTCTTTGTC 131141
|| || ||||||||
Sbjct 5496 ATACCCTCTTTGTC 5509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472002870030720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |