Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1267 140 2e-28
seq379 116 2e-21
seq990 100 2e-16
>seq1267
Length=1228
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 697 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 756
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 757 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 791
>seq379
Length=78611
Score = 116 bits (128), Expect = 2e-21
Identities = 207/300 (69%), Gaps = 4/300 (1%)
Strand=Plus/Minus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGG 6244
|||| | ||| | || ||||||||||| ||| || ||| | |||||||||||||
Sbjct 3678 ATGTCTCCGACCCATTTTACCGCTACAAGATGGAACG--TCTACAGTCCAAGGTCGAGGG 3621
Query 6245 TAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGG 6304
||||| || ||||| |||||||| |||||||| || | ||||| || |||||
Sbjct 3620 CAAGGGCAATGGTATCAAAACCGTTGTTGTCAACTTGAGCAACGTCGCCCAGCAGCTCGC 3561
Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364
|||||| | || | || || ||||| | |||| | || || ||||| | |
Sbjct 3560 CCGCCCTCCAGGATATGTCATCAAGTACTTCGGATTCGAATTGGGTGCCCAGACCAACAT 3501
Query 6365 TGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424
|| | || |||| |||| ||| | ||||| | ||| | | | ||||||||||||
Sbjct 3500 CGACCCTAAGGACGACCGCTGGATCATCAACGGCGCCCATGAAGCCGGCAAGCTGCAGGA 3441
Query 6425 CTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
| || |||||||| || ||||||||| || || || || || | |||||||| ||
Sbjct 3440 TTACCTCGACGGCTTCATCAACAAGTTTGTCCTTTGCCGTGACTGTAAAAACCCGGAAAC 3381
>seq990
Length=11377
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || | || ||||| ||||||||| || ||||| ||||| ||||||||||| || ||
Sbjct 11013 ACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGA 10954
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| | |||| || ||||| || || || || |||| | || || || | ||
Sbjct 10953 CAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGG 10894
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||| || ||||| ||| || |||||| || | | ||||| | ||| ||
Sbjct 10893 TATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGAC 10834
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || || || || || | ||||| ||||| ||||||||
Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 86.0 bits (94), Expect = 4e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || |||| || | |||||| ||||||||||||||||| ||||| ||
Sbjct 10330 TACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGC 10271
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|| | || | || || | ||| || ||||| || || |||||||| ||||| | |
Sbjct 10270 TCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAG 10211
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245
||| ||||| ||||| ||| || ||| |||||
Sbjct 10210 GGATACCTTCCTTGTCTTGAATCTTGCTCTTGACATT 10174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334940329709573
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |