Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1267 140 2e-28 seq379 116 2e-21 seq990 100 2e-16 >seq1267 Length=1228 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 697 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 756 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 757 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 791 >seq379 Length=78611 Score = 116 bits (128), Expect = 2e-21 Identities = 207/300 (69%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGG 6244 |||| | ||| | || ||||||||||| ||| || ||| | ||||||||||||| Sbjct 3678 ATGTCTCCGACCCATTTTACCGCTACAAGATGGAACG--TCTACAGTCCAAGGTCGAGGG 3621 Query 6245 TAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGG 6304 ||||| || ||||| |||||||| |||||||| || | ||||| || ||||| Sbjct 3620 CAAGGGCAATGGTATCAAAACCGTTGTTGTCAACTTGAGCAACGTCGCCCAGCAGCTCGC 3561 Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364 |||||| | || | || || ||||| | |||| | || || ||||| | | Sbjct 3560 CCGCCCTCCAGGATATGTCATCAAGTACTTCGGATTCGAATTGGGTGCCCAGACCAACAT 3501 Query 6365 TGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424 || | || |||| |||| ||| | ||||| | ||| | | | |||||||||||| Sbjct 3500 CGACCCTAAGGACGACCGCTGGATCATCAACGGCGCCCATGAAGCCGGCAAGCTGCAGGA 3441 Query 6425 CTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 | || |||||||| || ||||||||| || || || || || | |||||||| || Sbjct 3440 TTACCTCGACGGCTTCATCAACAAGTTTGTCCTTTGCCGTGACTGTAAAAACCCGGAAAC 3381 >seq990 Length=11377 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | || ||||| ||||||||| || ||||| ||||| ||||||||||| || || Sbjct 11013 ACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGA 10954 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | |||| || ||||| || || || || |||| | || || || | || Sbjct 10953 CAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGG 10894 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||| || ||||| ||| || |||||| || | | ||||| | ||| || Sbjct 10893 TATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGAC 10834 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || || || || | ||||| ||||| |||||||| Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || |||| || | |||||| ||||||||||||||||| ||||| || Sbjct 10330 TACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGC 10271 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | || | || || | ||| || ||||| || || |||||||| ||||| | | Sbjct 10270 TCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAG 10211 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 ||| ||||| ||||| ||| || ||| ||||| Sbjct 10210 GGATACCTTCCTTGTCTTGAATCTTGCTCTTGACATT 10174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940329709573