Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 132 6e-26
seq959 100 4e-16
>seq1295
Length=44835
Score = 132 bits (146), Expect = 6e-26
Identities = 440/677 (65%), Gaps = 12/677 (2%)
Strand=Plus/Plus
Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052
||||||| || || | |||| | || ||||| ||||| | |||||||||||| | |
Sbjct 17325 TCGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTC 17384
Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63111
|| | || | || ||| |||||||| || | || || |||||||| || || |||
Sbjct 17385 CATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAA 17444
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
|| || | | | ||| || || || ||||| || |||||||| | |
Sbjct 17445 -AGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAA 17503
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
|| || | ||||||||| || | || ||||| | | || || || ||||| || ||
Sbjct 17504 TATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACC 17563
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
||||| | || | || ||||| || || || | | ||| || | | || || ||
Sbjct 17564 TTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGA 17623
Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT----ATTACTAATTGATA 63347
|| ||||| || || ||||| || | || ||||| ||| |||| |
Sbjct 17624 AGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTAC--ATTG--A 17679
Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407
||||||| || || || | || ||||| | |||||| ||| | || ||||| ||||
Sbjct 17680 GACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGC 17739
Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTA 63466
|||| ||||| || ||| |||||| || | ||||| || || |||| | ||
Sbjct 17740 CCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGG-GCGGATGGT 17798
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
|| || || | || | ||| || ||||| ||||| || | || | || | || |||
Sbjct 17799 GTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTG 17858
Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586
|| ||||| || || | || || || || || || || || |||||||| | |
Sbjct 17859 TAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATC 17918
Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAtttttccaaa 63646
||||| || ||||| || | || || || ||| ||| | || || ||| | |
Sbjct 17919 ATGTGTTGCGGTCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGA 17978
Query 63647 gttttaaaaccaaaata 63663
|| || || ||||||||
Sbjct 17979 GTCTTGAAGCCAAAATA 17995
>seq959
Length=28360
Score = 100 bits (110), Expect = 4e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 32651 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710
||| | || ||| ||||| || ||| | ||||| || | ||| | ||||||||
Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128
Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770
||| || || |||||||| || ||||||||||| ||||| || ||||| || || || |
Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068
Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805
||| |||||||| || ||||| || || || ||||
Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAA 16033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633618669966800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |