Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1295 132 6e-26 seq959 100 4e-16 >seq1295 Length=44835 Score = 132 bits (146), Expect = 6e-26 Identities = 440/677 (65%), Gaps = 12/677 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||||| || || | |||| | || ||||| ||||| | |||||||||||| | | Sbjct 17325 TCGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAAAGTC 17384 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63111 || | || | || ||| |||||||| || | || || |||||||| || || ||| Sbjct 17385 CATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAA 17444 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || || | | | ||| || || || ||||| || |||||||| | | Sbjct 17445 -AGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAA 17503 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || || | ||||||||| || | || ||||| | | || || || ||||| || || Sbjct 17504 TATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACC 17563 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| | || | || ||||| || || || | | ||| || | | || || || Sbjct 17564 TTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGA 17623 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT----ATTACTAATTGATA 63347 || ||||| || || ||||| || | || ||||| ||| |||| | Sbjct 17624 AGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTAC--ATTG--A 17679 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 ||||||| || || || | || ||||| | |||||| ||| | || ||||| |||| Sbjct 17680 GACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGC 17739 Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTA 63466 |||| ||||| || ||| |||||| || | ||||| || || |||| | || Sbjct 17740 CCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGG-GCGGATGGT 17798 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || | || | ||| || ||||| ||||| || | || | || | || ||| Sbjct 17799 GTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAGGTTG 17858 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||| || || | || || || || || || || || |||||||| | | Sbjct 17859 TAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATC 17918 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAtttttccaaa 63646 ||||| || ||||| || | || || || ||| ||| | || || ||| | | Sbjct 17919 ATGTGTTGCGGTCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTCAAGA 17978 Query 63647 gttttaaaaccaaaata 63663 || || || |||||||| Sbjct 17979 GTCTTGAAGCCAAAATA 17995 >seq959 Length=28360 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 32651 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 ||| | || ||| ||||| || ||| | ||||| || | ||| | |||||||| Sbjct 16187 AAAGAGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGA 16128 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770 ||| || || |||||||| || ||||||||||| ||||| || ||||| || || || | Sbjct 16127 AAAGGTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCT 16068 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 ||| |||||||| || ||||| || || || |||| Sbjct 16067 AGAGAAGAAAATGCCCTCTACAGCGGCGAAAGCAA 16033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618669966800