Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq990 116 3e-21 >seq990 Length=11377 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| ||| |||||||| | || || |||||||| Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| |||| |||||| || ||||| || || || || ||||| Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || |||||||| | || |||| ||||| | || ||||| Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 10509 Query 25179 ATTCAAAAAGAA 25190 |||||||||||| Sbjct 10510 ATTCAAAAAGAA 10521 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | ||||| || ||||||| | ||||| || || | Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| |||||||| || ||||| |||||||| Sbjct 10618 GATACGATAGACAACGTGAAGTCGAAGATTCAA-GACAAAGAGGGTATTCCGCCTGACCA 10676 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || |||||||| ||| | ||||||| | || || || ||||| Sbjct 10677 ACAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAA 10736 Query 25178 TATTCAAAAAGAA 25190 ||||| || ||| Sbjct 10737 CATTCAGAAGGAA 10749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | ||||| || ||||||| | ||||| || ||| Sbjct 10786 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC 10845 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| ||||| || || || || || ||||| Sbjct 10846 GATACGATTGACAACGTGAAGTCGAAGATTCAA-GACAAGGAGGGCATACCTCCAGACCA 10904 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || || ||||| ||||| ||||| | | | || || || ||||| Sbjct 10905 GCAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGACGTTGTCAGACTACAA 10964 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||| ||| || ||||| ||||| Sbjct 10965 TATTCAGAAGGAAAGCACCCTGCATTTGGTGCT 10997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319111765645