Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq959 168 7e-37 >seq959 Length=28360 Score = 168 bits (186), Expect = 7e-37 Identities = 374/558 (67%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || || ||||| || || | || || || || || || | ||| ||| || || | | Sbjct 16177 CAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGA 16118 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || || |||||||| || || || || || | ||| || || Sbjct 16117 CCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAA 16058 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 || || || || || || || || || | ||| | | || | | ||| ||| Sbjct 16057 ATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATTCTTATCGCTA 15998 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTT 93330 |||||| | |||||||| || || || || || || | |||| ||||| ||||| Sbjct 15997 ATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGA-TGTTGTCGATGGCGTT 15939 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||||| || || | | || || | ||||| || ||||| | |||||| || | Sbjct 15938 GAATAGATACGTGCGTTGTTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGT 15879 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||||| |||| ||||||||| || ||||| |||||||| || | ||||| | || Sbjct 15878 CTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTAT 15819 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||||| || || |||| ||| ||||| || || ||||| || || || ||||| || Sbjct 15818 TTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCGC 15759 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCA 93567 |||||| || | | ||| || || ||| ||||| || || ||| | ||| Sbjct 15758 AAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGCGCTTGTTCCA 15699 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 || | ||||||||||||||||| || ||| | ||||| || || ||||| || || Sbjct 15698 GTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGGAGGCTTCCGCCTT 15639 Query 93628 TTTGTACATATCCCATAT 93645 |||||||| | |||||| Sbjct 15638 CTTGTACATTTGCCATAT 15621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849085040920