Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq959 168 7e-37
>seq959
Length=28360
Score = 168 bits (186), Expect = 7e-37
Identities = 374/558 (67%), Gaps = 5/558 (1%)
Strand=Plus/Minus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| || ||||| || || | || || || || || || | ||| ||| || || | |
Sbjct 16177 CAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGA 16118
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || || || || |||||||| || || || || || | ||| || ||
Sbjct 16117 CCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAA 16058
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271
|| || || || || || || || || | ||| | | || | | ||| |||
Sbjct 16057 ATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATTCTTATCGCTA 15998
Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTT 93330
|||||| | |||||||| || || || || || || | |||| ||||| |||||
Sbjct 15997 ATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGA-TGTTGTCGATGGCGTT 15939
Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390
||||| || || | | || || | ||||| || ||||| | |||||| || |
Sbjct 15938 GAATAGATACGTGCGTTGTTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGT 15879
Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450
||||| |||| ||||||||| || ||||| |||||||| || | ||||| | ||
Sbjct 15878 CTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTAT 15819
Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510
||||| || || |||| ||| ||||| || || ||||| || || || ||||| ||
Sbjct 15818 TTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCGC 15759
Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCA 93567
|||||| || | | ||| || || ||| ||||| || || ||| | |||
Sbjct 15758 AAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGCGCTTGTTCCA 15699
Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627
|| | ||||||||||||||||| || ||| | ||||| || || ||||| || ||
Sbjct 15698 GTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGGAGGCTTCCGCCTT 15639
Query 93628 TTTGTACATATCCCATAT 93645
|||||||| | ||||||
Sbjct 15638 CTTGTACATTTGCCATAT 15621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556849085040920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |