Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq990 125 6e-24
seq1295 118 9e-22
seq1047 100 2e-16
seq928 98.7 8e-16
>seq990
Length=11377
Score = 125 bits (138), Expect = 6e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | ||||| ||||| |||| ||||| || || | ||
Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | ||| ||||| ||||| || |||||||| || || || ||
Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || || ||||||||| | |||||| ||||||| |||| || ||||||
Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 10509
Query 22399 ATTCAAAAAGAA 22410
||||||||||||
Sbjct 10510 ATTCAAAAAGAA 10521
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||||||| | ||||| || || ||||||| ||||| ||| | |
Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | | || || ||||||||||| ||||||||||| || || |||
Sbjct 10618 GATACGATAGACAACGTGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCAA 10677
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | || || || |||||||| || | || ||| | || | || || ||||||
Sbjct 10678 CAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAAC 10737
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || ||| || |||| || || |||| | || || |||
Sbjct 10738 ATTCAGAAGGAAAGTACATTACACTTGGTCCTGCGTCTCCGTGGTGGT 10785
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || ||||||| || || || | | || || | || || ||||
Sbjct 10126 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGAGC 10185
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| |||||||||||||| ||||| || || ||||| ||||| || || || ||||||||
Sbjct 10186 AAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCAAG 10245
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | || ||| |||||| | ||| |||||||||||||| || ||| | |||
Sbjct 10246 CAACTCGAAGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGCACGCTTCAT 10305
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || |||| |||| || |||
Sbjct 10306 CTTGTACTGCGCCTGCGTGGTGGT 10329
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || |||||| | ||||| || || |||| || ||||| ||| | | |
Sbjct 10786 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC 10845
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | | || || ||||||||||||||||| || || || || ||
Sbjct 10846 GATACGATTGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGCATACCTCCAGACCAG 10905
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || || || ||||| || || || || | || | || || |||||
Sbjct 10906 CAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGACGTTGTCAGACTACAAT 10965
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || ||| |||| | ||||| || |||| |||| || |||
Sbjct 10966 ATTCAGAAGGAAAGCACCCTGCATTTGGTGCTGCGTCTGCGTGGCGGT 11013
>seq1295
Length=44835
Score = 118 bits (130), Expect = 9e-22
Identities = 291/436 (67%), Gaps = 13/436 (3%)
Strand=Plus/Plus
Query 129977 ATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAAT 130036
|||| |||||||||||||| |||| | | | | || || |||||||| ||||| |
Sbjct 17362 ATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGT 17421
Query 130037 CGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT----TTCTATCCTCGGCACCCATG 130092
| || | ||| || ||||| || | || || || |||| || | | || |
Sbjct 17422 CTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCT-TCTTTGCCATGGTTC 17480
Query 130093 TTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCC 130152
|| || ||| || ||||| | | ||||| || |||||||| |||| ||| || ||
Sbjct 17481 TTGCG---CAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCA 17537
Query 130153 ATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACT 130209
| || || || ||| || ||||| || || | ||| | | |||||||| ||
Sbjct 17538 AAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACA 17597
Query 130210 CGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGA 130269
|| | ||| | |||||||||| | || || ||||||| |||| | || || |
Sbjct 17598 CGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAAT-ATACGACCCTGT 17656
Query 130270 -GCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA 130328
|| |||| | || || | |||||||| || || || ||||| |||| |||||
Sbjct 17657 TGCGCGAATGCGGTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCA 17716
Query 130329 ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACA 130388
|| || ||||||||||| |||||||||| || || |||| | | ||||||
Sbjct 17717 TGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACA 17776
Query 130389 CGAGGCCAATTGGGCG 130404
|| ||||||||||||
Sbjct 17777 TGAAGCCAATTGGGCG 17792
>seq1047
Length=44052
Score = 100 bits (110), Expect = 2e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370
|||||| |||||||| ||||| || || || ||||| || ||||||||||| ||| | ||
Sbjct 5510 AGACAAAGAGGGTATCCCACCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGA 5451
Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430
|||| |||||| |||||||||| || ||||| || || ||| | ||| | ||| |
Sbjct 5450 GGATGGTCGCACCCTCTCCGATTATAATATTCAGAAGGAGAGCACTCTTCATCTGGTTCT 5391
Query 22431 GCGATTGCGCGGAGG 22445
|| ||||| || ||
Sbjct 5390 CCGCTTGCGTGGTGG 5376
>seq928
Length=40960
Score = 98.7 bits (108), Expect = 8e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || |||||||||||||| || ||||||||||| |||||||| || || || |||||
Sbjct 360 AAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTCTGATCTTCGCTGGCAAG 419
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
||||| |||||| ||||| | ||||| |||||||| || ||
Sbjct 420 CAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGAA 463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419719390722895
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |