Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq990 125 6e-24 seq1295 118 9e-22 seq1047 100 2e-16 seq928 98.7 8e-16 >seq990 Length=11377 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| ||||| |||| ||||| || || | || Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | ||| ||||| ||||| || |||||||| || || || || Sbjct 10390 GACACCATCGACAACGTGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 10449 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||||||| | |||||| ||||||| |||| || |||||| Sbjct 10450 CAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 10509 Query 22399 ATTCAAAAAGAA 22410 |||||||||||| Sbjct 10510 ATTCAAAAAGAA 10521 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | ||||| || || ||||||| ||||| ||| | | Sbjct 10558 ATGCAAATCTTTGTTAAAACTCTCACCGGCAAGACCATCACTCTAGAAGTCGAATCAAGT 10617 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || || ||||||||||| ||||||||||| || || ||| Sbjct 10618 GATACGATAGACAACGTGAAGTCGAAGATTCAAGACAAAGAGGGTATTCCGCCTGACCAA 10677 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || |||||||| || | || ||| | || | || || |||||| Sbjct 10678 CAAAGACTAATCTTCGCCGGCAAGCAACTGGAAGATGGGAGAACGTTGTCAGACTACAAC 10737 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||| || |||| || || |||| | || || ||| Sbjct 10738 ATTCAGAAGGAAAGTACATTACACTTGGTCCTGCGTCTCCGTGGTGGT 10785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || ||||||| || || || | | || || | || || |||| Sbjct 10126 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCGGACACGATCGATAATGTCAAGAGC 10185 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| ||||| || || ||||| ||||| || || || |||||||| Sbjct 10186 AAGATTCAAGACAAGGAAGGTATCCCTCCAGATCAGCAACGCCTGATCTTCGCCGGCAAG 10245 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| |||||| | ||| |||||||||||||| || ||| | ||| Sbjct 10246 CAACTCGAAGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGCACGCTTCAT 10305 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| |||| || ||| Sbjct 10306 CTTGTACTGCGCCTGCGTGGTGGT 10329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | ||||| || || |||| || ||||| ||| | | | Sbjct 10786 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC 10845 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || || ||||||||||||||||| || || || || || Sbjct 10846 GATACGATTGACAACGTGAAGTCGAAGATTCAAGACAAGGAGGGCATACCTCCAGACCAG 10905 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || ||||| || || || || | || | || || ||||| Sbjct 10906 CAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGACGTTGTCAGACTACAAT 10965 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||| |||| | ||||| || |||| |||| || ||| Sbjct 10966 ATTCAGAAGGAAAGCACCCTGCATTTGGTGCTGCGTCTGCGTGGCGGT 11013 >seq1295 Length=44835 Score = 118 bits (130), Expect = 9e-22 Identities = 291/436 (67%), Gaps = 13/436 (3%) Strand=Plus/Plus Query 129977 ATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAAT 130036 |||| |||||||||||||| |||| | | | | || || |||||||| ||||| | Sbjct 17362 ATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGT 17421 Query 130037 CGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT----TTCTATCCTCGGCACCCATG 130092 | || | ||| || ||||| || | || || || |||| || | | || | Sbjct 17422 CTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCT-TCTTTGCCATGGTTC 17480 Query 130093 TTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCC 130152 || || ||| || ||||| | | ||||| || |||||||| |||| ||| || || Sbjct 17481 TTGCG---CAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCA 17537 Query 130153 ATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACT 130209 | || || || ||| || ||||| || || | ||| | | |||||||| || Sbjct 17538 AAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACA 17597 Query 130210 CGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGA 130269 || | ||| | |||||||||| | || || ||||||| |||| | || || | Sbjct 17598 CGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAAT-ATACGACCCTGT 17656 Query 130270 -GCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA 130328 || |||| | || || | |||||||| || || || ||||| |||| ||||| Sbjct 17657 TGCGCGAATGCGGTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCA 17716 Query 130329 ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACA 130388 || || ||||||||||| |||||||||| || || |||| | | |||||| Sbjct 17717 TGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACA 17776 Query 130389 CGAGGCCAATTGGGCG 130404 || |||||||||||| Sbjct 17777 TGAAGCCAATTGGGCG 17792 >seq1047 Length=44052 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||| |||||||| ||||| || || || ||||| || ||||||||||| ||| | || Sbjct 5510 AGACAAAGAGGGTATCCCACCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGA 5451 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 |||| |||||| |||||||||| || ||||| || || ||| | ||| | ||| | Sbjct 5450 GGATGGTCGCACCCTCTCCGATTATAATATTCAGAAGGAGAGCACTCTTCATCTGGTTCT 5391 Query 22431 GCGATTGCGCGGAGG 22445 || ||||| || || Sbjct 5390 CCGCTTGCGTGGTGG 5376 >seq928 Length=40960 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| || ||||||||||| |||||||| || || || ||||| Sbjct 360 AAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTCTGATCTTCGCTGGCAAG 419 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||||| |||||| ||||| | ||||| |||||||| || || Sbjct 420 CAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGAA 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719390722895