Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq990 149 1e-30 seq959 141 2e-28 seq928 132 9e-26 >seq990 Length=11377 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||||| || || || || ||||| || || || Sbjct 10784 CCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGAC 10725 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || ||||||||||| | ||||| |||||||| || |||||||||||||| || ||| Sbjct 10724 AACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGA 10665 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || |||||||||||||| | ||| ||| || || || || |||||| ||| Sbjct 10664 ATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACT 10605 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| || || || || || ||||| Sbjct 10604 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || ||| || || || || || || || || Sbjct 11012 CCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGAC 10953 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||||| || ||||| || ||||| || ||||| || | ||| || ||||| || || Sbjct 10952 AACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGT 10893 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||||||||||||||| | ||| ||| || || || || ||| ||||| || Sbjct 10892 ATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATC-GCTCGATTCGAC 10834 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | ||||||||| || || ||||| || |||||||| |||||||| Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| ||| | || |||||| ||| ||||| ||||| || ||| Sbjct 10328 CCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 10269 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| |||||||| || || | ||| || || || || Sbjct 10268 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGG 10209 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| |||||| ||||| ||||| | || || || Sbjct 10208 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACC 10149 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||| || || |||| Sbjct 10148 TCGAGAGTGATGGTCTTGCCGGTGA 10124 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | ||| || || |||||||| ||||| || || ||| Sbjct 10556 CCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAG 10497 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| || | | || ||||| || || Sbjct 10496 AGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 10437 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || ||||| || || | || ||| ||||||||||| | || || || Sbjct 10436 ATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACC 10377 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || || |||||||| || |||||||| Sbjct 10376 TCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 >seq959 Length=28360 Score = 141 bits (156), Expect = 2e-28 Identities = 296/436 (68%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 9936 ATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCG 9995 || ||||| |||||||| || || || | ||| ||||| |||| ||||||| | Sbjct 16480 ATCACGCCAGCCTTCTGATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCC 16421 Query 9996 AGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCG 10055 | || ||| ||||||||||||||| ||||| |||| | | | || || ||| Sbjct 16420 AACGAGATGTTCTCCATGAAGTCAAATGGGTTGGTGGCGTTGTAATACCTGCTGTTGCCG 16361 Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115 || || | | ||| || ||||| ||||||||||| |||| ||| |||| |||||| Sbjct 16360 AGCGCGAGCAGTAGGCGATCGGCCACAAACTCGATGTATTGGCACATGAGGTTGGAGTTC 16301 Query 10116 ATGCC-AATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||||| | | |||| |||| || | ||| | ||| |||||||| ||| ||| || Sbjct 16300 ATGCCTAGTAGTGCGACAGGCAAT-GAGTCTGTCACGAACTCCTTTTCAATGGTGACGGC 16242 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 ||| || ||||||| | |||| || | ||||||| || | ||| | || Sbjct 16241 TTCAGTGATGATGCTCCTCACCAGCTCCCGATCGGGCTTGTTGCGAAGGTGGGAAAAGAG 16182 Query 10235 GAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 || | || | ||| ||| | |||||| || ||| || | ||||||||| || Sbjct 16181 CAGACAGGCGAAGT-CTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGG 16123 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 ||||||||||||||| || || || ||||||||||||| ||| || | |||| Sbjct 16122 TCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGA 16063 Query 10354 ACAGAAGACCCTCCAC 10369 | | || ||||| || Sbjct 16062 AGAAAATGCCCTCTAC 16047 >seq928 Length=40960 Score = 132 bits (146), Expect = 9e-26 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| | || | |||||| || |||||||| || ||||| || Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| || |||||||| ||||| ||||||||||| ||||| ||| || || Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCT 344 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| ||| || || || || | |||||||| || |||||||||||||||||||| Sbjct 343 ATCGTGTC-GCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603011368760