Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq990 149 1e-30
seq959 141 2e-28
seq928 132 9e-26
>seq990
Length=11377
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||||| || || || || ||||| || || ||
Sbjct 10784 CCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGAC 10725
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || ||||||||||| | ||||| |||||||| || |||||||||||||| || |||
Sbjct 10724 AACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGA 10665
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || |||||||||||||| | ||| ||| || || || || |||||| |||
Sbjct 10664 ATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACT 10605
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||| || || || || || |||||
Sbjct 10604 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 147 bits (162), Expect = 4e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| ||||| || || ||| || || || || || || || ||
Sbjct 11012 CCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGAC 10953
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||||| || ||||| || ||||| || ||||| || | ||| || ||||| || ||
Sbjct 10952 AACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGT 10893
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||| ||||||||||||||||| | ||| ||| || || || || ||| ||||| ||
Sbjct 10892 ATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATC-GCTCGATTCGAC 10834
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | ||||||||| || || ||||| || |||||||| ||||||||
Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 122 bits (134), Expect = 2e-22
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| ||| | || |||||| ||| ||||| ||||| || |||
Sbjct 10328 CCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 10269
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| |||||||| || || | ||| || || || ||
Sbjct 10268 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGG 10209
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||||||||| |||||| ||||| ||||| | || || ||
Sbjct 10208 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACC 10149
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||||| || || ||||
Sbjct 10148 TCGAGAGTGATGGTCTTGCCGGTGA 10124
Score = 113 bits (124), Expect = 8e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| || | ||| || || |||||||| ||||| || || |||
Sbjct 10556 CCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAG 10497
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||| || || ||||| || | | || ||||| || ||
Sbjct 10496 AGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 10437
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || || ||||| || || | || ||| ||||||||||| | || || ||
Sbjct 10436 ATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACC 10377
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||||| || || || |||||||| || ||||||||
Sbjct 10376 TCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330
>seq959
Length=28360
Score = 141 bits (156), Expect = 2e-28
Identities = 296/436 (68%), Gaps = 4/436 (1%)
Strand=Plus/Minus
Query 9936 ATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCG 9995
|| ||||| |||||||| || || || | ||| ||||| |||| ||||||| |
Sbjct 16480 ATCACGCCAGCCTTCTGATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCC 16421
Query 9996 AGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCG 10055
| || ||| ||||||||||||||| ||||| |||| | | | || || |||
Sbjct 16420 AACGAGATGTTCTCCATGAAGTCAAATGGGTTGGTGGCGTTGTAATACCTGCTGTTGCCG 16361
Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115
|| || | | ||| || ||||| ||||||||||| |||| ||| |||| ||||||
Sbjct 16360 AGCGCGAGCAGTAGGCGATCGGCCACAAACTCGATGTATTGGCACATGAGGTTGGAGTTC 16301
Query 10116 ATGCC-AATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
||||| | | |||| |||| || | ||| | ||| |||||||| ||| ||| ||
Sbjct 16300 ATGCCTAGTAGTGCGACAGGCAAT-GAGTCTGTCACGAACTCCTTTTCAATGGTGACGGC 16242
Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234
||| || ||||||| | |||| || | ||||||| || | ||| | ||
Sbjct 16241 TTCAGTGATGATGCTCCTCACCAGCTCCCGATCGGGCTTGTTGCGAAGGTGGGAAAAGAG 16182
Query 10235 GAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293
|| | || | ||| ||| | |||||| || ||| || | ||||||||| ||
Sbjct 16181 CAGACAGGCGAAGT-CTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGG 16123
Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353
||||||||||||||| || || || ||||||||||||| ||| || | ||||
Sbjct 16122 TCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGA 16063
Query 10354 ACAGAAGACCCTCCAC 10369
| | || ||||| ||
Sbjct 16062 AGAAAATGCCCTCTAC 16047
>seq928
Length=40960
Score = 132 bits (146), Expect = 9e-26
Identities = 139/180 (77%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| | || | |||||| || |||||||| || ||||| ||
Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | ||| || |||||||| ||||| ||||||||||| ||||| ||| || ||
Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGTCT 344
Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| ||| || || || || | |||||||| || ||||||||||||||||||||
Sbjct 343 ATCGTGTC-GCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921603011368760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |