Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq959 293 4e-74
>seq959
Length=28360
Score = 293 bits (324), Expect = 4e-74
Identities = 584/852 (69%), Gaps = 30/852 (4%)
Strand=Plus/Plus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
||||||||||||||| | |||| |||||| ||||||||||| || || | || ||
Sbjct 15630 ATGTACAAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATCTTTCAAAAGAT 15689
Query 42369 ACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425
| | |||| | | ||| ||| |||| || ||| || | | ||
Sbjct 15690 TTGCATGACTGGAACAAGCGCCTGAATGATGACGAGCGTTTCTTCATCTCTCATGTCCTC 15749
Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485
||||| || || || || ||||| || ||||| |||||||| | | | |||
Sbjct 15750 GCCTTTTTTGCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGAGCGATTCTCAGCC 15809
Query 42486 GAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544
|||||||| ||| || || ||||||||||||||||||||||| || ||||| |
Sbjct 15810 GAGGTGCAAATACCC-GAAGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAATAT 15868
Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC----CGTCG 42597
||||||||| ||| | ||||||| |||| |||||| || || | ||
Sbjct 15869 CCACTCTGAGACTTACTCT---CTGCTCATCGACACCTACATCAGCGAACCGAAACAACG 15925
Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657
|||| | | ||||| ||||| || | || || |||||| ||||||||||| |
Sbjct 15926 CACGTATC----TATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAGGCGGATT 15981
Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716
||||||| ||||| || | || | ||||||||| | || || || ||
Sbjct 15982 GGGCGCTGCGATGGATT-AGCGATAAGAATTCGACGTTCGGCTGTCGTCTCGTTGCTTTC 16040
Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776
|||| || |||||||| |||||||| || ||||||| ||||| ||||||||||| ||
Sbjct 16041 GCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTCAAAAAG 16100
Query 42777 AA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835
||| || |||||||| || ||||| || ||||| || || | | || ||||| |
Sbjct 16101 CGTGGTCTC-ATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAGGGCAT 16159
Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC--TCGAAG 42893
||| | ||||| ||||| || || || || |||||| | |||||||| ||| |
Sbjct 16160 GCACACAGACTTCGCCTGTCTGCTCTTTTC---CCACCTTCGCAACAAGCCCGATCG--G 16214
Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953
|||| ||| || ||||||||| || ||||| || || ||||||||| | || |
Sbjct 16215 GAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTGACAGAC 16274
Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013
|| |||| || | || | ||||||||| | ||||||||||| | |||||| |||
Sbjct 16275 TCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACATCGAGTTT 16334
Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073
|| ||||| | || ||| | | | || |||| | |||||| | | |||
Sbjct 16335 GTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTATTACAACGCCACCAACCCA 16394
Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133
|| ||||| ||||||||||||||||||| |||||||||||| || || |||||| | |||
Sbjct 16395 TTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGAAGAGAGTC 16454
Query 43134 GCCGACTACCAG 43145
| || || |||
Sbjct 16455 GGTGATTATCAG 16466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944319333464080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |