Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq959 293 4e-74 >seq959 Length=28360 Score = 293 bits (324), Expect = 4e-74 Identities = 584/852 (69%), Gaps = 30/852 (4%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||||||| | |||| |||||| ||||||||||| || || | || || Sbjct 15630 ATGTACAAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATCTTTCAAAAGAT 15689 Query 42369 ACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | | |||| | | ||| ||| |||| || ||| || | | || Sbjct 15690 TTGCATGACTGGAACAAGCGCCTGAATGATGACGAGCGTTTCTTCATCTCTCATGTCCTC 15749 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||| || || || || ||||| || ||||| |||||||| | | | ||| Sbjct 15750 GCCTTTTTTGCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGAGCGATTCTCAGCC 15809 Query 42486 GAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 |||||||| ||| || || ||||||||||||||||||||||| || ||||| | Sbjct 15810 GAGGTGCAAATACCC-GAAGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAATAT 15868 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC----CGTCG 42597 ||||||||| ||| | ||||||| |||| |||||| || || | || Sbjct 15869 CCACTCTGAGACTTACTCT---CTGCTCATCGACACCTACATCAGCGAACCGAAACAACG 15925 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 |||| | | ||||| ||||| || | || || |||||| ||||||||||| | Sbjct 15926 CACGTATC----TATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAGGCGGATT 15981 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||||| ||||| || | || | ||||||||| | || || || || Sbjct 15982 GGGCGCTGCGATGGATT-AGCGATAAGAATTCGACGTTCGGCTGTCGTCTCGTTGCTTTC 16040 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||| || |||||||| |||||||| || ||||||| ||||| ||||||||||| || Sbjct 16041 GCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTCAAAAAG 16100 Query 42777 AA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || |||||||| || ||||| || ||||| || || | | || ||||| | Sbjct 16101 CGTGGTCTC-ATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAGGGCAT 16159 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC--TCGAAG 42893 ||| | ||||| ||||| || || || || |||||| | |||||||| ||| | Sbjct 16160 GCACACAGACTTCGCCTGTCTGCTCTTTTC---CCACCTTCGCAACAAGCCCGATCG--G 16214 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 |||| ||| || ||||||||| || ||||| || || ||||||||| | || | Sbjct 16215 GAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTGACAGAC 16274 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 || |||| || | || | ||||||||| | ||||||||||| | |||||| ||| Sbjct 16275 TCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACATCGAGTTT 16334 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 || ||||| | || ||| | | | || |||| | |||||| | | ||| Sbjct 16335 GTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTATTACAACGCCACCAACCCA 16394 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 || ||||| ||||||||||||||||||| |||||||||||| || || |||||| | ||| Sbjct 16395 TTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGAAGAGAGTC 16454 Query 43134 GCCGACTACCAG 43145 | || || ||| Sbjct 16455 GGTGATTATCAG 16466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319333464080