Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq990 102 6e-17
seq1047 86.0 5e-12
>seq990
Length=11377
Score = 102 bits (112), Expect = 6e-17
Identities = 165/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| |||||||||| ||| || ||||| ||||||||||| ||||| ||||
Sbjct 11013 ACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGA 10954
Query 33960 CAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017
||| ||| || |||| |||||||||||||| || || || | | |||||| ||
Sbjct 10953 CAAC-GTC-CTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGA 10896
Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTC 34076
|| | || ||| ||||| ||| || ||| | | ||| | |||| | |||||
Sbjct 10895 GGTATGCCCTCCTTGTCTTGAATCTTCGACTTCA-CGTTGTCAATCGTATCGCTCGATTC 10837
Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| ||| | || || || || ||||| || ||||| || ||||| |||||
Sbjct 10836 GACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 96.9 bits (106), Expect = 3e-15
Identities = 92/115 (80%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| ||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct 10329 ACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCT 10270
Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
|| | || || | || || | |||||||||||| || |||||||| ||||||||
Sbjct 10269 CAGAGTG-CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATC 10216
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| ||||| |||| || | || || ||||||||||||||||| |||| ||| || |
Sbjct 10775 AGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTC 10716
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || |||| |||||||||||| || || || | || || || ||| | | ||||
Sbjct 10715 CCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCT 10656
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
||||| ||| || ||| | | | ||||| | |||||| ||| | ||
Sbjct 10655 TTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTG 10596
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || ||||| || ||||| ||||||||||||||
Sbjct 10595 ATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
>seq1047
Length=44052
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCG 33972
|| || ||||||||||| ||||||||||||||||| || ||||| | | || |
Sbjct 5388 CGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGACCA 5447
Query 33973 TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTG 34032
|| || | |||||||||||||| ||||| |||||||| ||| || | | |||||||
Sbjct 5448 TCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCTTTG 5507
Query 34033 TCCAT 34037
|| ||
Sbjct 5508 TCTAT 5512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397054255629766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |