Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq990 102 6e-17 seq1047 86.0 5e-12 >seq990 Length=11377 Score = 102 bits (112), Expect = 6e-17 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||||| ||| || ||||| ||||||||||| ||||| |||| Sbjct 11013 ACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGA 10954 Query 33960 CAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 ||| ||| || |||| |||||||||||||| || || || | | |||||| || Sbjct 10953 CAAC-GTC-CTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGA 10896 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTC 34076 || | || ||| ||||| ||| || ||| | | ||| | |||| | ||||| Sbjct 10895 GGTATGCCCTCCTTGTCTTGAATCTTCGACTTCA-CGTTGTCAATCGTATCGCTCGATTC 10837 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || || || || ||||| || ||||| || ||||| ||||| Sbjct 10836 GACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||| || |||||||||||||||||||| ||||||||||| || Sbjct 10329 ACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCT 10270 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | || || | || || | |||||||||||| || |||||||| |||||||| Sbjct 10269 CAGAGTG-CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATC 10216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||| |||| || | || || ||||||||||||||||| |||| ||| || | Sbjct 10775 AGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTC 10716 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||||||| || || || | || || || ||| | | |||| Sbjct 10715 CCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCT 10656 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 ||||| ||| || ||| | | | ||||| | |||||| ||| | || Sbjct 10655 TTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTG 10596 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || ||||| |||||||||||||| Sbjct 10595 ATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 >seq1047 Length=44052 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCG 33972 || || ||||||||||| ||||||||||||||||| || ||||| | | || | Sbjct 5388 CGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGACCA 5447 Query 33973 TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTG 34032 || || | |||||||||||||| ||||| |||||||| ||| || | | ||||||| Sbjct 5448 TCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCTTTG 5507 Query 34033 TCCAT 34037 || || Sbjct 5508 TCTAT 5512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397054255629766