Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq990 149 1e-30 seq928 114 3e-20 >seq990 Length=11377 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || ||||||||||| || || ||||| | | Sbjct 10556 CCACCACGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAG 10497 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||||| || ||||| |||| ||||| || ||| Sbjct 10496 AGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 10437 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || |||||||| |||||||||| ||||||||| || || | ||| ||| || || Sbjct 10436 ATACCCTCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACC 10377 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || |||||||| |||||||| || |||||||| Sbjct 10376 TCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | || || | ||| | |||||||| || || ||||| ||||| Sbjct 11015 TGACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCT 10956 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | ||| | |||||||| ||||| || || |||||||| | | ||| || ||| Sbjct 10955 GACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGG---TCT 10899 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || || || || || |||| |||||||| || || | |||||||||| Sbjct 10898 GGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGAT 10839 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| ||||| ||||| |||||||| |||||||| Sbjct 10838 TCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Score = 111 bits (122), Expect = 4e-19 Identities = 151/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| ||||||| |||||| || ||||| || || |||||| Sbjct 10328 CCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 10269 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| | ||| || || ||||||||||| || || || |||| Sbjct 10268 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTG---ATCTGGA 10212 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| || || || || || ||| || || || || || | || ||| || Sbjct 10211 GGGATACCTTCCTTGTCTTGAATCTT-GCTCTTGACATTATCGATCGTGTCCGACGACTC 10153 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGT 288449 || ||||| ||||| ||||| ||||| Sbjct 10152 GACCTCGAGAGTGATGGTCTTGCCGGT 10126 >seq928 Length=40960 Score = 114 bits (126), Expect = 3e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| | ||||| || || || || || || || ||||||||| Sbjct 463 TTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGATC 404 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404 ||||| || ||| |||||| || || || || ||||| || ||| ||||| || || Sbjct 403 AGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTT-GCTCTTCACATTGTC 345 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 ||| | ||||| || || || ||||| ||||| ||||| || || || ||||||||||| Sbjct 344 TATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628962596074