Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1295 165 1e-35 seq959 109 7e-19 seq444 84.2 3e-11 >seq1295 Length=44835 Score = 165 bits (182), Expect = 1e-35 Identities = 876/1379 (64%), Gaps = 25/1379 (2%) Strand=Plus/Plus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| || || |||||| |||| ||| || | || || ||||| |||||| Sbjct 16563 GTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATG 16622 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || |||| || | ||| |||| || | | ||| ||||||| | ||| Sbjct 16623 GGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCCTTGAGTGAATCC 16682 Query 114074 CAGTCGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 ||||| || || | ||| | | | |||||| || | || || |||| | Sbjct 16683 CAGTCCCAGA-GATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAGTTCCCCTTTGCT 16741 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 114192 | | || || || | | ||||| ||||| || |||||||| |||| || || Sbjct 16742 GACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAGTTCGCAGGAGGC 16801 Query 114193 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT-GCCTTGGCCTCGT 114251 ||| | ||| ||||||| || ||||| || || || || | | |||| | ||| Sbjct 16802 CTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCGTCTTG-CTTCGG 16860 Query 114252 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 114311 || || |||| | || || || |||| || || || |||||| | || Sbjct 16861 GAGAGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCACTGACACCCAAGC 16920 Query 114312 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTA 114370 |||| ||||| || | | ||| ||| ||||| ||| |||||||||| || || Sbjct 16921 CAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCT-TCTGGCACGGGATAATGGTTGATA 16979 Query 114371 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 114430 ||||||| | | || | ||||| || || ||||| || | ||||||||| || | | || Sbjct 16980 TCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGAAGTTTCTTGAAA 17039 Query 114431 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 114490 | |||| | | || || || || | || | || | || || ||||| || Sbjct 17040 TTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGATGCAAGATTGCAG 17099 Query 114491 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 114550 |||| | |||||| |||||||||| ||||| || || |||| || ||| | Sbjct 17100 ACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGGTTGGAAGAGCGA 17159 Query 114551 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 114610 ||||| || | ||| || || || || ||| |||| |||||||| || |||| | Sbjct 17160 ATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTATAGCACATGAAG 17219 Query 114611 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCAC 114669 || || || ||||||||||| | || ||| || || | ||| | || || || |||| Sbjct 17220 GGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTCTGC-GCACGCAC 17278 Query 114670 AGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 114729 ||| || | || ||||| ||||| | | |||||| || || |||| ||| || Sbjct 17279 AGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTCGAACTTTTCCCC 17338 Query 114730 CACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCT 114788 | || | || || || || || | || || | | || |||| | || Sbjct 17339 ATACACATCAGCAAGGCCAGG-GCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCT 17397 Query 114789 CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGC 114848 ||| || || |||||||| | |||||||||||| || || |||| || || ||| | Sbjct 17398 GCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCAC 17457 Query 114849 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 114908 | ||||||| | || || || |||| || | ||| | || ||||| |||| Sbjct 17458 GGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCC 17517 Query 114909 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 114965 |||| || || || | || | | || ||| ||| | || | ||||||| Sbjct 17518 ACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACC 17577 Query 114966 TCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCC 115025 ||| ||| || |||| |||||||| || | | || | || |||||||| | Sbjct 17578 GCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGC 17637 Query 115026 CCCGAATACGAGACTTATTGGCTCTGACATCATG-GATGTGCAT----ACCAATACCCCC 115080 | | |||| ||| | || | || ||| | ||| ||| ||| ||||| || Sbjct 17638 CACCAATATACGACCCTGTTGCGC-GA----ATGCGGTGTACATTGAGACCTATACCACC 17692 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 || ||||||||| ||||| | ||| || | || || || ||||| ||| Sbjct 17693 AGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTC 17752 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 |||| | | || | ||| || | || ||| | |||||| || || |||| Sbjct 17753 CTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATGGTGTGCCGGCCATGAA 17812 Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGA 115259 |||||||||| || || |||| ||| | | ||||| | ||||||||| | Sbjct 17813 CAGGGTTGGTGAAGCATGAGTGAA-GTACTTGTTCGACATGAGGTTGTAGGTCTCGATTG 17871 Query 115260 CGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 115318 | || |||||||| ||||| ||||| | || || ||||| | ||||| ||| ||| Sbjct 17872 CAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATGATCATGTGTTGCGGT 17930 >seq959 Length=28360 Score = 109 bits (120), Expect = 7e-19 Identities = 345/525 (66%), Gaps = 15/525 (3%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 ||| || ||| ||| | ||||| |||||||| || || || || || ||| ||| || Sbjct 16175 GGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGACC 16116 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| ||||| || | ||||||||| | || || | |||||||| || Sbjct 16115 GGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAAAT 16056 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCG-CGACTTTGTGTC-- 126222 ||||| ||| ||||| |||| |||||| |||| || || ||| || | || Sbjct 16055 GCCCTCTACAGCGGCGAAAGCAACGAGACG-ACAGC---CGAACGTCGAATTCTTATCGC 16000 Query 126223 -AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTT 126281 || ||| || |||||| | |||||| || |||| || |||| | | | ||| || | Sbjct 15999 TAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGT 15940 Query 126282 CAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 126341 || || | | | || | || || ||||||| | || ||||| || || | Sbjct 15939 TGAATAGATACGTGCGTTGTTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAG 15880 Query 126342 TTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTT 126400 | || ||||| | | ||| || | ||| | ||||||| |||| |||||| | Sbjct 15879 TCTCAGAGTGGATATTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGT 15821 Query 126401 ATCTGTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCC 126459 || || ||||| | | | ||| | | || ||||| ||||| || || || | Sbjct 15820 ATTTGCACCTCGGCTG-AGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGC 15762 Query 126460 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTT 126516 |||||||| || |||| || ||||| | || | || |||||| | || Sbjct 15761 CGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGCGCTTGTT 15702 Query 126517 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 |||||| | | ||| || || ||||| | |||||| || ||||| Sbjct 15701 CCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCA 15657 >seq444 Length=108798 Score = 84.2 bits (92), Expect = 3e-11 Identities = 202/301 (67%), Gaps = 15/301 (5%) Strand=Plus/Plus Query 10779 TGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGT 10838 |||| | ||||||||| |||||||| | | ||| || | || || | ||| |||| Sbjct 52333 TGATATGACGATCAAAACGACCTGGTCTCATGAGAGCTTTATCTAGAACATCTGCTCGGT 52392 Query 10839 TCGTCGCCGCGATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 | || | || | |||||||| ||| | | | | | ||||||||||||||| || | Sbjct 52393 TTGTTCCTGCCAAGACAACGACTTGCTC--CGAGGTGTTAAAGCCATCCATCTCTGTGAG 52450 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTG 10956 | |||||||| || || |||||||| || || || ||| || ||||| ||| Sbjct 52451 AATTTGATTGAGAGTAGACTCTCGTTCATCGTT-GCCACCA--CCAAACG-ACTGCTTTG 52506 Query 10957 C-------TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCAC 11009 | || || | ||||||||||||||| ||||| | ||| || || ||||| | Sbjct 52507 CCCTCGATTTGCCTATGGCGTCAATTTCATCTATGAAGATGATGCAAGGGGTATTTTTTC 52566 Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069 ||| | || | ||||| ||||| | || || || || ||||| ||||||| Sbjct 52567 TCGCATTCTGGAATAGGTCTCGTACTCTTGACGGGCCAACGCCGACGAACATCTCCACAA 52626 Query 11070 A 11070 | Sbjct 52627 A 52627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341033173640