Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq990 132 5e-26
seq1047 82.4 8e-11
>seq990
Length=11377
Score = 132 bits (146), Expect = 5e-26
Identities = 172/235 (73%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034
|||| |||| || | | ||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 11019 TTATTGACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTA 10960
Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| | || |||| |||| || | ||||| || ||||| || | || |||||||||
Sbjct 10959 GTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTC 10900
Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 42153
| || | || |||||||| | ||| | || | | ||| | | | ||| |||||||
Sbjct 10899 TGGAGGTATGCCCTCCTTGT-CTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCG 10841
Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| || || | |||||||| ||||| || || || || || ||||| |||||
Sbjct 10840 ATTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 102 bits (112), Expect = 9e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
|| || || |||||||| ||||| |||| || || || | || || ||||| || |||
Sbjct 10526 GTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCA 10467
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
||||| || | ||||||||||| | || | | ||| || || |||||| |||
Sbjct 10466 GCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTC 10407
Query 42132 AGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190
| ||| | | | |||||| ||| || || || | |||||||||||||| || || ||
Sbjct 10406 A-CGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGT 10348
Query 42191 CTTTACAAAGATTTGCAT 42208
||| |||||||| |||||
Sbjct 10347 CTTGACAAAGATCTGCAT 10330
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||||| || ||||| || ||||| ||||| ||||| || | || || | | |
Sbjct 10773 ACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCC 10714
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || || ||||| || ||||| || |||| || ||||| | || | | ||| ||
Sbjct 10713 ATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTT 10654
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| | || | | ||| | | | ||| || || ||||| || || | ||||
Sbjct 10653 GTCT-TGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGA 10595
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||| || || || || ||||||||||||||
Sbjct 10594 TGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
>seq1047
Length=44052
Score = 82.4 bits (90), Expect = 8e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||| ||| | ||||||||||| |||||||| ||||| | || || || | || ||
Sbjct 5394 ACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGACCATCCTCG 5453
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||| || || || || || ||||||||||| | ||| | | ||| ||||| |||
Sbjct 5454 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCTTTGTCTATG 5513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543201372160720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |