Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq990 113 5e-20
seq1047 86.0 6e-12
>seq990
Length=11377
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311
||| || ||||||||||| |||| | || | | | ||||| || ||||||||||| |
Sbjct 10749 TTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAA 10690
Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371
|| || | || ||||| || ||||| || ||||| ||||| || || ||| ||
Sbjct 10689 GATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTT 10630
Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431
|| | ||||||| | || ||||||| ||| | |||||||||||| | |||||| ||
Sbjct 10629 GTCTATCGTATCACTTGATTCGACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAAC 10570
Query 64432 GAAAATTTGCAT 64443
|| ||||||||
Sbjct 10569 AAAGATTTGCAT 10558
Score = 100 bits (110), Expect = 3e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311
|||||||||||||||||| || | || |||||| | || |||||||| ||||| || |
Sbjct 10521 TTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAA 10462
Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| | ||||||||||| ||||| || || ||||| ||||| |||||
Sbjct 10461 AATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTT 10414
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| |||| | ||||| | ||| | || ||| || ||||| ||||| ||||
Sbjct 11013 ACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGA 10954
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || | ||||||| | |||||||| || | || | | ||||||||| |||||
Sbjct 10953 CAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGG 10894
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| || || ||| || || | ||||| | | || ||
Sbjct 10893 TATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGAC 10834
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | |||||||||||| | |||||| ||||| || |||||
Sbjct 10833 TTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || ||||||| ||| || |||||||||||||| ||
Sbjct 10329 ACCACCACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCT 10270
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | ||||| || ||||||||||| | || || || ||||| || |||||
Sbjct 10269 CAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGG 10210
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393
|| ||||| || ||||| || || ||| ||| || | || | ||| || ||
Sbjct 10209 GATACCTTCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGT--CCGACGACTCG 10152
Query 64394 ACTTCTACAGTTACGGTCTTGCCGGT 64419
|| || | ||| | ||||||||||||
Sbjct 10151 ACCTCGAGAGTGATGGTCTTGCCGGT 10126
>seq1047
Length=44052
Score = 86.0 bits (94), Expect = 6e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || ||||| | || || ||||||| || || || ||||| || ||||| | |
Sbjct 5376 CCACCACGCAAGCGGAGAACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAG 5435
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| | || || ||||||||||||||| | || || ||||||||||| || ||
Sbjct 5436 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 5495
Query 64337 ATTCCTTCTTTTTCT 64351
|| || ||||| |||
Sbjct 5496 ATACCCTCTTTGTCT 5510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499634288722520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |