Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq959 138 1e-27
seq990 102 8e-17
>seq959
Length=28360
Score = 138 bits (152), Expect = 1e-27
Identities = 297/440 (68%), Gaps = 7/440 (2%)
Strand=Plus/Plus
Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463
|| || |||||| || |||||| | || || || || ||| || |||| || |
Sbjct 16032 GTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGG 16091
Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523
| |||| | || | |||||||| ||||| || ||||||| | || || || ||
Sbjct 16092 CTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGAT 16151
Query 52524 GAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583
|| || ||||||| ||||| || || ||| || | | | | | | | ||
Sbjct 16152 GAGGGCATGCACACAGACTTCGCCTG--TCTGCT-CTTTTCCCACCTTCGCAACAAGCCC 16208
Query 52584 GATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTT 52643
||| ||| | | |||||| ||| || || || | || ||||||||||| |
Sbjct 16209 GATCGGGAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTG 16268
Query 52644 ACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATC 52703
|| | | | |||| |||| || || ||||||||| | | ||||||| | ||||||
Sbjct 16269 ACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACATC 16328
Query 52704 GAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG--GCAGCCAAAGTACTTCAACGCTC 52761
||||||||||| ||||| || || | |||||| |||| | ||| | ||||||
Sbjct 16329 GAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGC--AGGTATTACAACGCCA 16386
Query 52762 GCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGA 52821
||| || ||||| || ||| | ||||| ||| | | |||||||||||| || || ||||
Sbjct 16387 CCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGA 16446
Query 52822 AGCGAGTCGGCGAGTATAAG 52841
|| ||||||| || ||| ||
Sbjct 16447 AGAGAGTCGGTGATTATCAG 16466
>seq990
Length=11377
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483
|| ||||||||||||||||| | || || ||||| || ||||| || | |
Sbjct 10520 TCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAA 10461
Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543
|| | ||||| ||||||||||| ||||| ||||| || |||||| ||| | |
Sbjct 10460 ATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTCACGTTG 10401
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | |||||||| |||||| ||||| | || | ||||| || ||||| || || |||
Sbjct 10400 TCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACA 10341
Query 138604 AAAATCTGCAT 138614
|| ||||||||
Sbjct 10340 AAGATCTGCAT 10330
Score = 93.3 bits (102), Expect = 4e-14
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||||||||||||||||||||||| ||| || || |||||||| || |||| |
Sbjct 10293 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAA 10234
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATT 138541
||| || || || || || ||||| |||||||| ||||| ||| | || | || | |
Sbjct 10233 GATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTC-TTGAATCTTGCTCTTGACAT 10175
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGA 138571
|| | ||||| | |||||| |||||||
Sbjct 10174 TATCGATCGTGTCCGACGACTCGACCTCGA 10145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496251959879760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |