Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq959 138 1e-27 seq990 102 8e-17 >seq959 Length=28360 Score = 138 bits (152), Expect = 1e-27 Identities = 297/440 (68%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463 || || |||||| || |||||| | || || || || ||| || |||| || | Sbjct 16032 GTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGG 16091 Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523 | |||| | || | |||||||| ||||| || ||||||| | || || || || Sbjct 16092 CTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGAT 16151 Query 52524 GAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583 || || ||||||| ||||| || || ||| || | | | | | | | || Sbjct 16152 GAGGGCATGCACACAGACTTCGCCTG--TCTGCT-CTTTTCCCACCTTCGCAACAAGCCC 16208 Query 52584 GATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTT 52643 ||| ||| | | |||||| ||| || || || | || ||||||||||| | Sbjct 16209 GATCGGGAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTG 16268 Query 52644 ACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATC 52703 || | | | |||| |||| || || ||||||||| | | ||||||| | |||||| Sbjct 16269 ACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACATC 16328 Query 52704 GAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG--GCAGCCAAAGTACTTCAACGCTC 52761 ||||||||||| ||||| || || | |||||| |||| | ||| | |||||| Sbjct 16329 GAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGC--AGGTATTACAACGCCA 16386 Query 52762 GCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGA 52821 ||| || ||||| || ||| | ||||| ||| | | |||||||||||| || || |||| Sbjct 16387 CCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGA 16446 Query 52822 AGCGAGTCGGCGAGTATAAG 52841 || ||||||| || ||| || Sbjct 16447 AGAGAGTCGGTGATTATCAG 16466 >seq990 Length=11377 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || ||||||||||||||||| | || || ||||| || ||||| || | | Sbjct 10520 TCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAA 10461 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || | ||||| ||||||||||| ||||| ||||| || |||||| ||| | | Sbjct 10460 ATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTCACGTTG 10401 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||||| |||||| ||||| | || | ||||| || ||||| || || ||| Sbjct 10400 TCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGACA 10341 Query 138604 AAAATCTGCAT 138614 || |||||||| Sbjct 10340 AAGATCTGCAT 10330 Score = 93.3 bits (102), Expect = 4e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||||||||||||||||||||||| ||| || || |||||||| || |||| | Sbjct 10293 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAA 10234 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATT 138541 ||| || || || || || ||||| |||||||| ||||| ||| | || | || | | Sbjct 10233 GATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTC-TTGAATCTTGCTCTTGACAT 10175 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGA 138571 || | ||||| | |||||| ||||||| Sbjct 10174 TATCGATCGTGTCCGACGACTCGACCTCGA 10145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251959879760