Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq990 114 1e-20
seq959 93.3 4e-14
seq1295 84.2 2e-11
>seq990
Length=11377
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982
||||||||||| ||||| || | ||||| ||| || |||||||| |||||| |
Sbjct 10520 TCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAA 10461
Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTG 127041
||||| |||||||| || ||||| || ||||| || || ||||||| || | ||||
Sbjct 10460 ATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTCACGTTG 10401
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
| ||| |||||| | ||| || || | || | |||||||||||||| || || ||
Sbjct 10400 T-CGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGAC 10342
Query 127102 AAAAATCTGCAT 127113
||| ||||||||
Sbjct 10341 AAAGATCTGCAT 10330
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||||||| | || || || ||||||||||| || || ||| | |
Sbjct 11000 CGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGTCCTACCG 10941
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || | || || || ||| |||| |||| |||||| || ||||||||||||||||||
Sbjct 10940 TCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTG 10881
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|| || ||| ||| | |||| || | || || | |||||||| | ||| |
Sbjct 10880 TCTTGAATCTTCGACTTCACGTTG-TCAATCGTATCGCTCGATTCGACTTCTAGGGTGAT 10822
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||||||| |||||||| || || ||||||||
Sbjct 10821 GGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786
>seq959
Length=28360
Score = 93.3 bits (102), Expect = 4e-14
Identities = 290/442 (66%), Gaps = 23/442 (5%)
Strand=Plus/Plus
Query 47148 GCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATG 47207
||||||||| || |||||| | |||||||| || ||| || | || || | |
Sbjct 16035 GCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTC 16094
Query 47208 AAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAA 47267
|||| || | |||||||| || || ||| ||||||||| || || | || ||
Sbjct 16095 AAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAG 16154
Query 47268 GGCCTGCACACCAACTTTGCCTGTCT---CTACTACAACACTAGAGTCGATCAA-AAGTT 47323
||| ||||||| |||| |||||||| || | | || || ||| ||| |||
Sbjct 16155 GGCATGCACACAGACTTCGCCTGTCTGCTCTTTTCCCAC-CT----TCG--CAACAAGCC 16207
Query 47324 GGA-CGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTT 47382
|| || | | || || ||| | | ||||||||| ||||||| | ||||||
Sbjct 16208 CGATCGGGAGCTG-GTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCG 16266
Query 47383 TCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACA 47442
| | || | |||| | | || | || |||||| | | | ||| | | ||||
Sbjct 16267 TGACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACA 16326
Query 47443 TCGAATTTGTCGCCGACCGCCTGCT-----CGTTCAGCTAAAGTATCCCAAGATTTACCA 47497
|||| ||||| ||||| ||||| || || || || | || || | |||| |
Sbjct 16327 TCGAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAG-----CAGGTATTACAA 16381
Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557
| || || ||||| || || ||| | ||||| ||| | | |||||||||||| || ||
Sbjct 16382 CGCCACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTT 16441
Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579
|||||| | ||||| || |||
Sbjct 16442 TGAGAAGAGAGTCGGTGATTAT 16463
>seq1295
Length=44835
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
||||||||||||| |||||||| || ||||| || | || | ||| ||| |||
Sbjct 16510 GGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACG 16569
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
||||||| | || ||| || | ||||||| |||| || || |||||| |||||
Sbjct 16570 GCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCA 16629
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTT 146219
||||||| ||||| | || ||||| || || ||||||
Sbjct 16630 CCAGCAATGAGTTGCGGACTCCGTG-CTGTGCAATCTT 16666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475490796651920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |