Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq990 114 1e-20 seq959 93.3 4e-14 seq1295 84.2 2e-11 >seq990 Length=11377 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 ||||||||||| ||||| || | ||||| ||| || |||||||| |||||| | Sbjct 10520 TCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCGAAA 10461 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTG 127041 ||||| |||||||| || ||||| || ||||| || || ||||||| || | |||| Sbjct 10460 ATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTCACGTTG 10401 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 | ||| |||||| | ||| || || | || | |||||||||||||| || || || Sbjct 10400 T-CGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTCTTGAC 10342 Query 127102 AAAAATCTGCAT 127113 ||| |||||||| Sbjct 10341 AAAGATCTGCAT 10330 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||||||| | || || || ||||||||||| || || ||| | | Sbjct 11000 CGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGTCCTACCG 10941 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | || || || ||| |||| |||| |||||| || |||||||||||||||||| Sbjct 10940 TCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTG 10881 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || || ||| ||| | |||| || | || || | |||||||| | ||| | Sbjct 10880 TCTTGAATCTTCGACTTCACGTTG-TCAATCGTATCGCTCGATTCGACTTCTAGGGTGAT 10822 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| |||||||| || || |||||||| Sbjct 10821 GGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 >seq959 Length=28360 Score = 93.3 bits (102), Expect = 4e-14 Identities = 290/442 (66%), Gaps = 23/442 (5%) Strand=Plus/Plus Query 47148 GCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATG 47207 ||||||||| || |||||| | |||||||| || ||| || | || || | | Sbjct 16035 GCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTC 16094 Query 47208 AAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAA 47267 |||| || | |||||||| || || ||| ||||||||| || || | || || Sbjct 16095 AAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAG 16154 Query 47268 GGCCTGCACACCAACTTTGCCTGTCT---CTACTACAACACTAGAGTCGATCAA-AAGTT 47323 ||| ||||||| |||| |||||||| || | | || || ||| ||| ||| Sbjct 16155 GGCATGCACACAGACTTCGCCTGTCTGCTCTTTTCCCAC-CT----TCG--CAACAAGCC 16207 Query 47324 GGA-CGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTT 47382 || || | | || || ||| | | ||||||||| ||||||| | |||||| Sbjct 16208 CGATCGGGAGCTG-GTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCG 16266 Query 47383 TCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACA 47442 | | || | |||| | | || | || |||||| | | | ||| | | |||| Sbjct 16267 TGACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACA 16326 Query 47443 TCGAATTTGTCGCCGACCGCCTGCT-----CGTTCAGCTAAAGTATCCCAAGATTTACCA 47497 |||| ||||| ||||| ||||| || || || || | || || | |||| | Sbjct 16327 TCGAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAG-----CAGGTATTACAA 16381 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | || || ||||| || || ||| | ||||| ||| | | |||||||||||| || || Sbjct 16382 CGCCACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTT 16441 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 |||||| | ||||| || ||| Sbjct 16442 TGAGAAGAGAGTCGGTGATTAT 16463 >seq1295 Length=44835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||||||||| |||||||| || ||||| || | || | ||| ||| ||| Sbjct 16510 GGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACG 16569 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||||| | || ||| || | ||||||| |||| || || |||||| ||||| Sbjct 16570 GCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCA 16629 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTT 146219 ||||||| ||||| | || ||||| || || |||||| Sbjct 16630 CCAGCAATGAGTTGCGGACTCCGTG-CTGTGCAATCTT 16666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490796651920