Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 201 1e-46
seq959 116 5e-21
seq444 82.4 9e-11
>seq1295
Length=44835
Score = 201 bits (222), Expect = 1e-46
Identities = 898/1395 (64%), Gaps = 33/1395 (2%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
|| ||||| | ||||| ||||| || || |||||| |||| ||| || | || ||
Sbjct 16551 TAAATGTTCGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGAC 16610
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
||||| |||||||| |||| || | |||||||| || | ||| ||
Sbjct 16611 GCTGTTGGCATGGGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCC 16670
Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCCCCTCCCACATATCAAACTGGAG 116081
||||| | |||||||| || || | ||| | | | ||||||| || | || ||
Sbjct 16671 TTGAGTGAATCCCAGTCCCAGA-GATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAG 16729
Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141
|||| | | || || || | | ||||||||||| || ||||||||
Sbjct 16730 TTCCCCTTTGCTGACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAG 16789
Query 116142 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT-G 116200
|||| || ||||| | ||| ||||||| || ||||| || || || || | |
Sbjct 16790 TTCGCAGGAGGCCTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCG 16849
Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260
|||| | ||| || || |||| | || || || |||| || || ||
Sbjct 16850 TCTTG-CTTCGGGAGAGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCAC 16908
Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGA 116319
|||||| | |||||| ||||| || | | ||| ||| ||||| ||| |||||||
Sbjct 16909 TGACACCCAAGCCAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCT-TCTGGCACGGGA 16967
Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379
||| || ||||||||| | | || | ||||| || || ||||| || | |||||||
Sbjct 16968 TAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGA 17027
Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439
|| || | | ||| |||| | | || || || || | || | || | ||
Sbjct 17028 AGTTTCTTGAAATTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGAT 17087
Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499
|| ||||| || |||| | |||||| |||||||||| ||||| || || ||||
Sbjct 17088 GCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGG 17147
Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559
|| ||| |||||| || | ||| || || || || ||| |||| ||||||||
Sbjct 17148 TTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTA 17207
Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618
||| ||| | || || || ||||||||||| | || ||| || || | ||||| ||
Sbjct 17208 TAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTC 17267
Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678
|| || ||||||| || | || ||||| ||||| | | |||||| |||||
Sbjct 17268 TGC-GCACGCACAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTC 17326
Query 116679 AAACTCTTCACCCACA-GCCTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGAC 116736
|||| ||| |||| | | || | || || || || || | ||||| | | || |
Sbjct 17327 GAACTTTTC-CCCATACACATCAGCAAGGCCAGG-GCATTCGTGCGGACACATCAAAGTC 17384
Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796
||| | || ||| ||||| |||||||| | |||||||||||| ||||| ||||
Sbjct 17385 CATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAA 17444
Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856
|| || ||| || ||||||| | || || || |||| || | ||| |
Sbjct 17445 AGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAAT 17504
Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCA 116910
|| ||||| |||||||| || || || | || | | || | |||| |||
Sbjct 17505 ATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACC---GGGACGCTTGTTGCCA 17561
Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970
| || | ||||||| ||| || ||| |||| |||||||| || | | || |
Sbjct 17562 CCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTT 17621
Query 116971 GATTGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATCGTGGATGTGCAT 117029
|| |||||||| || | |||| || | |||| || | || || | || ||| |||
Sbjct 17622 GAAGTTCCATTTGTGCCACCAATATACGACCCTGTT-GCGC-GA-AT-GCGG-TGTACAT 17676
Query 117030 ----ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085
||| ||||| || || ||||||||| ||||| | ||| || | || |
Sbjct 17677 TGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAA 17736
Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145
| || ||||| ||| |||| | | || | ||| || | || ||| | ||
Sbjct 17737 TGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATG 17796
Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 117204
|||| || || |||| |||||||||| || || |||| ||| | | |||||
Sbjct 17797 GTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAA-GTACTTGTTCGACATGAGG 17855
Query 117205 TCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATA 117264
| ||||||||| | ||| |||||||| ||||| ||||| | | || |||||
Sbjct 17856 TTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATG 17915
Query 117265 AACATGTATTGGGGT 117279
| ||||| ||| |||
Sbjct 17916 ATCATGTGTTGCGGT 17930
>seq959
Length=28360
Score = 116 bits (128), Expect = 5e-21
Identities = 344/523 (66%), Gaps = 13/523 (2%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
|| || ||| ||| | ||||| |||||||| || || || || || ||| ||||||
Sbjct 16174 GCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGACCG 16115
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| ||||| || | ||||||||| | || |||| ||||||||| ||
Sbjct 16114 GGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAAATG 16055
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696
||||| ||| ||||| |||| ||||| | | || | || || |||| |
Sbjct 16054 CCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACG---TCGAATTCTTATCGCTA 15998
Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756
| ||| || |||||| | ||||| || |||| ||||||| | | | ||| || |
Sbjct 15997 ATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTG 15938
Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816
|| || | | | || | || || ||||||| | || ||||| || || ||
Sbjct 15937 AATAGATACGTGCGTTGTTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGTC 15878
Query 127817 TCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875
|| ||||| | | ||| || | ||| | ||||||| |||| |||||| |||
Sbjct 15877 TCAGAGTGGATATTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTAT 15819
Query 127876 CTGTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934
|| ||||| | | | ||| | | || ||||| ||||| || || || | |
Sbjct 15818 TTGCACCTCGGCTG-AGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCG 15760
Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCC 127991
||||||| || |||| || ||||| | || | || |||||| | ||||
Sbjct 15759 CAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGCGCTTGTTCC 15700
Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
|||| | | ||| ||||| ||||| | |||||| || |||||
Sbjct 15699 AGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCA 15657
>seq444
Length=108798
Score = 82.4 bits (90), Expect = 9e-11
Identities = 203/302 (67%), Gaps = 17/302 (6%)
Strand=Plus/Plus
Query 12694 TGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGT 12753
|||| | ||||||||| |||||||| | | ||| || | || || | ||| ||||
Sbjct 52333 TGATATGACGATCAAAACGACCTGGTCTCATGAGAGCTTTATCTAGAACATCTGCTCGGT 52392
Query 12754 TCGTCGCCGCGATGACAACGA--TGC-CCGTCTCGTTATCGAAGCCATCCATCTCAGTCA 12810
| || | || | |||||||| ||| ||| |||| |||||||||||||| || |
Sbjct 52393 TTGTTCCTGCCAAGACAACGACTTGCTCCGAGGTGTTA---AAGCCATCCATCTCTGTGA 52449
Query 12811 AGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTT 12870
| |||||||| || || |||||||| || || || ||| || ||||| ||
Sbjct 52450 GAATTTGATTGAGAGTAGACTCTCGTTCATCGTT-GCCACCA--CCAAACG-ACTGCTTT 52505
Query 12871 GC-------TTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCA 12923
|| || || | |||||||||||| || ||||| | ||| || || |||||
Sbjct 52506 GCCCTCGATTTGCCTATGGCGTCAATTTCATCTATGAAGATGATGCAAGGGGTATTTTTT 52565
Query 12924 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983
| ||| | || | ||||| ||||| | || || || || ||||||||||||
Sbjct 52566 CTCGCATTCTGGAATAGGTCTCGTACTCTTGACGGGCCAACGCCGACGAACATCTCCACA 52625
Query 12984 AA 12985
||
Sbjct 52626 AA 52627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613494293342280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |