Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1295 201 1e-46 seq959 116 5e-21 seq444 82.4 9e-11 >seq1295 Length=44835 Score = 201 bits (222), Expect = 1e-46 Identities = 898/1395 (64%), Gaps = 33/1395 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | ||||| ||||| || || |||||| |||| ||| || | || || Sbjct 16551 TAAATGTTCGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGAC 16610 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 ||||| |||||||| |||| || | |||||||| || | ||| || Sbjct 16611 GCTGTTGGCATGGGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTTCGCC 16670 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCCCCTCCCACATATCAAACTGGAG 116081 ||||| | |||||||| || || | ||| | | | ||||||| || | || || Sbjct 16671 TTGAGTGAATCCCAGTCCCAGA-GATCGGTTGGCGTCACGCCCCACATGTCGTATTGCAG 16729 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141 |||| | | || || || | | ||||||||||| || |||||||| Sbjct 16730 TTCCCCTTTGCTGACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTTGCTCCGCCAG 16789 Query 116142 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT-G 116200 |||| || ||||| | ||| ||||||| || ||||| || || || || | | Sbjct 16790 TTCGCAGGAGGCCTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAATGTTTAGCCG 16849 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 |||| | ||| || || |||| | || || || |||| || || || Sbjct 16850 TCTTG-CTTCGGGAGAGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCGGCCAGGCCAC 16908 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGA 116319 |||||| | |||||| ||||| || | | ||| ||| ||||| ||| ||||||| Sbjct 16909 TGACACCCAAGCCAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCT-TCTGGCACGGGA 16967 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 ||| || ||||||||| | | || | ||||| || || ||||| || | ||||||| Sbjct 16968 TAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCATGA 17027 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 || || | | ||| |||| | | || || || || | || | || | || Sbjct 17028 AGTTTCTTGAAATTGTAACTCTCATTTTCAATATCCACGTATGTGGGTAAAGCCAGGGAT 17087 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 || ||||| || |||| | |||||| |||||||||| ||||| || || |||| Sbjct 17088 GCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGG 17147 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || ||| |||||| || | ||| || || || || ||| |||| |||||||| Sbjct 17148 TTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTA 17207 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 ||| ||| | || || || ||||||||||| | || ||| || || | ||||| || Sbjct 17208 TAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTTTC 17267 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 || || ||||||| || | || ||||| ||||| | | |||||| ||||| Sbjct 17268 TGC-GCACGCACAGTCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGAGCCTC 17326 Query 116679 AAACTCTTCACCCACA-GCCTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGAC 116736 |||| ||| |||| | | || | || || || || || | ||||| | | || | Sbjct 17327 GAACTTTTC-CCCATACACATCAGCAAGGCCAGG-GCATTCGTGCGGACACATCAAAGTC 17384 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 ||| | || ||| ||||| |||||||| | |||||||||||| ||||| |||| Sbjct 17385 CATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGTAGAAA 17444 Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856 || || ||| || ||||||| | || || || |||| || | ||| | Sbjct 17445 AGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGGAGAAT 17504 Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCA 116910 || ||||| |||||||| || || || | || | | || | |||| ||| Sbjct 17505 ATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACC---GGGACGCTTGTTGCCA 17561 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 | || | ||||||| ||| || ||| |||| |||||||| || | | || | Sbjct 17562 CCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCGTTT 17621 Query 116971 GATTGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || |||||||| || | |||| || | |||| || | || || | || ||| ||| Sbjct 17622 GAAGTTCCATTTGTGCCACCAATATACGACCCTGTT-GCGC-GA-AT-GCGG-TGTACAT 17676 Query 117030 ----ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 ||| ||||| || || ||||||||| ||||| | ||| || | || | Sbjct 17677 TGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATAAA 17736 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || ||||| ||| |||| | | || | ||| || | || ||| | || Sbjct 17737 TGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGATG 17796 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 117204 |||| || || |||| |||||||||| || || |||| ||| | | ||||| Sbjct 17797 GTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAA-GTACTTGTTCGACATGAGG 17855 Query 117205 TCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATA 117264 | ||||||||| | ||| |||||||| ||||| ||||| | | || ||||| Sbjct 17856 TTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCATG 17915 Query 117265 AACATGTATTGGGGT 117279 | ||||| ||| ||| Sbjct 17916 ATCATGTGTTGCGGT 17930 >seq959 Length=28360 Score = 116 bits (128), Expect = 5e-21 Identities = 344/523 (66%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 || || ||| ||| | ||||| |||||||| || || || || || ||| |||||| Sbjct 16174 GCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGACCG 16115 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| ||||| || | ||||||||| | || |||| ||||||||| || Sbjct 16114 GGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAAATG 16055 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696 ||||| ||| ||||| |||| ||||| | | || | || || |||| | Sbjct 16054 CCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACG---TCGAATTCTTATCGCTA 15998 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | ||| || |||||| | ||||| || |||| ||||||| | | | ||| || | Sbjct 15997 ATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTG 15938 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816 || || | | | || | || || ||||||| | || ||||| || || || Sbjct 15937 AATAGATACGTGCGTTGTTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGTC 15878 Query 127817 TCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875 || ||||| | | ||| || | ||| | ||||||| |||| |||||| ||| Sbjct 15877 TCAGAGTGGATATTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTAT 15819 Query 127876 CTGTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934 || ||||| | | | ||| | | || ||||| ||||| || || || | | Sbjct 15818 TTGCACCTCGGCTG-AGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCG 15760 Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCC 127991 ||||||| || |||| || ||||| | || | || |||||| | |||| Sbjct 15759 CAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGCGCTTGTTCC 15700 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| | | ||| ||||| ||||| | |||||| || ||||| Sbjct 15699 AGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCA 15657 >seq444 Length=108798 Score = 82.4 bits (90), Expect = 9e-11 Identities = 203/302 (67%), Gaps = 17/302 (6%) Strand=Plus/Plus Query 12694 TGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGT 12753 |||| | ||||||||| |||||||| | | ||| || | || || | ||| |||| Sbjct 52333 TGATATGACGATCAAAACGACCTGGTCTCATGAGAGCTTTATCTAGAACATCTGCTCGGT 52392 Query 12754 TCGTCGCCGCGATGACAACGA--TGC-CCGTCTCGTTATCGAAGCCATCCATCTCAGTCA 12810 | || | || | |||||||| ||| ||| |||| |||||||||||||| || | Sbjct 52393 TTGTTCCTGCCAAGACAACGACTTGCTCCGAGGTGTTA---AAGCCATCCATCTCTGTGA 52449 Query 12811 AGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTT 12870 | |||||||| || || |||||||| || || || ||| || ||||| || Sbjct 52450 GAATTTGATTGAGAGTAGACTCTCGTTCATCGTT-GCCACCA--CCAAACG-ACTGCTTT 52505 Query 12871 GC-------TTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCA 12923 || || || | |||||||||||| || ||||| | ||| || || ||||| Sbjct 52506 GCCCTCGATTTGCCTATGGCGTCAATTTCATCTATGAAGATGATGCAAGGGGTATTTTTT 52565 Query 12924 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 | ||| | || | ||||| ||||| | || || || || |||||||||||| Sbjct 52566 CTCGCATTCTGGAATAGGTCTCGTACTCTTGACGGGCCAACGCCGACGAACATCTCCACA 52625 Query 12984 AA 12985 || Sbjct 52626 AA 52627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494293342280