Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq990 123 6e-23 >seq990 Length=11377 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | ||||||||| | ||| || || ||||||||||| ||||| ||||||||| Sbjct 10748 TCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAG 10689 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || || | || ||||| || ||| || ||| || |||||||| ||||||| Sbjct 10688 ATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTG 10629 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | || || ||| ||| || || | ||||| ||||| || ||||||||||| ||| Sbjct 10628 TCTATCGTATCACTTGATTCGACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACA 10569 Query 199619 AAAATTTG 199626 || ||||| Sbjct 10568 AAGATTTG 10561 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||||||||| || || ||||| | ||||||||||| | || Sbjct 10550 CGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTG 10491 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||| || || ||||| || | ||||||||||||||| || || Sbjct 10490 CGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCC 10431 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || || || |||||| |||| |||||| | | || || || | Sbjct 10430 TCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGT 10371 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || || ||||| || || Sbjct 10370 GTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTG 10333 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | |||||||| | ||| ||||| || ||||||| ||||| || |||||| Sbjct 10976 TCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAG 10917 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | | ||||||||| ||| || || || || |||||||| ||||||| Sbjct 10916 ATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTG 10857 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | || || | | ||| || || | ||||| ||||| || ||||||||||| || Sbjct 10856 TCAATCGTATCGCTCGATTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACG 10797 Query 199619 AAAATTTG 199626 || || || Sbjct 10796 AAGATCTG 10789 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| ||||| || || || ||||||||| | ||||||||| || ||| Sbjct 10322 CGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTG 10263 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| ||||||||||| || || ||||| || ||| || ||| Sbjct 10262 CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCT 10203 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || |||| ||||| | | || || || | Sbjct 10202 TCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGA 10143 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 10142 GTGATGGTCTTGCCGGTGA 10124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178896178397761