Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq990 123 6e-23
>seq990
Length=11377
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498
||||| || | ||||||||| | ||| || || ||||||||||| ||||| |||||||||
Sbjct 10748 TCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAG 10689
Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558
|| || | || ||||| || ||| || ||| || |||||||| |||||||
Sbjct 10688 ATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTG 10629
Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618
|| | || || ||| ||| || || | ||||| ||||| || ||||||||||| |||
Sbjct 10628 TCTATCGTATCACTTGATTCGACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACA 10569
Query 199619 AAAATTTG 199626
|| |||||
Sbjct 10568 AAGATTTG 10561
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||||||||||||||| || || ||||| | ||||||||||| | ||
Sbjct 10550 CGGAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTG 10491
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || ||||| || || ||||| || | ||||||||||||||| || ||
Sbjct 10490 CGGCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCC 10431
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || || || || |||||| |||| |||||| | | || || || |
Sbjct 10430 TCTTTATCTTGGATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGT 10371
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || || || || ||||| || ||
Sbjct 10370 GTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTG 10333
Score = 96.9 bits (106), Expect = 8e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498
||||| || | |||||||| | ||| ||||| || ||||||| ||||| || ||||||
Sbjct 10976 TCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAG 10917
Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558
|| | | ||||||||| ||| || || || || |||||||| |||||||
Sbjct 10916 ATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTG 10857
Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618
|| | || || | | ||| || || | ||||| ||||| || ||||||||||| ||
Sbjct 10856 TCAATCGTATCGCTCGATTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACG 10797
Query 199619 AAAATTTG 199626
|| || ||
Sbjct 10796 AAGATCTG 10789
Score = 93.3 bits (102), Expect = 1e-13
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| ||||| || || || ||||||||| | ||||||||| || |||
Sbjct 10322 CGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTG 10263
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| || ||||| ||||||||||| || || ||||| || ||| || |||
Sbjct 10262 CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCT 10203
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| ||| || |||| ||||| | | || || || |
Sbjct 10202 TCCTTGTCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGA 10143
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 10142 GTGATGGTCTTGCCGGTGA 10124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178896178397761
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |