Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq990 132 5e-26 seq928 122 1e-22 seq1047 95.1 1e-14 >seq990 Length=11377 Score = 132 bits (146), Expect = 5e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | | ||||| ||||| ||||| || || ||||| || |||||||| Sbjct 11019 TTATTGACCGCCACGCAGACGCAGCACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTA 10960 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || | || | |||| || | |||||||| ||||| || || | ||||||||| Sbjct 10959 GTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTC 10900 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCG 46538 | || | || ||||||||| |||||| ||| | ||| | || ||| ||||||| Sbjct 10899 TGGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCA-CGTTGTCAATCGTATCGCTCG 10841 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 10840 ATTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTGCAT 10786 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || || | ||||| || ||||| || |||||||| || || ||||| | Sbjct 10545 ACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCC 10486 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| ||||| ||||| ||||||||||||||||| | || | | ||| || Sbjct 10485 ATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTT 10426 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 || ||| ||| || | ||| | | | |||||| ||| || || || | |||| Sbjct 10425 ATCTTGGATTTTCGATTTCA-CGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGA 10367 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||| ||||| || || |||||||| ||||| Sbjct 10366 TGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| || |||||||| ||||| || || |||||||| || | || | | | Sbjct 10773 ACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCC 10714 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || |||||||||||||| || | | || ||||| | ||| | | ||| || Sbjct 10713 ATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTT 10654 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| |||||| ||| | ||| | | | ||| || || ||||| || || | |||| Sbjct 10653 GTCTTGAATCTTCGACTTCA-CGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGA 10595 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || |||||||||||||||||||| Sbjct 10594 TGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || ||||||||||| || ||||||||| |||||||| | Sbjct 10316 CGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCA 10257 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| |||||||||||||| |||| ||| ||||| || | || | | |||||| Sbjct 10256 TCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTG 10197 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || ||||| |||||| | | | |||||| ||| || || || | |||||| Sbjct 10196 TCTTGAATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTGATG 10137 Query 46559 GTTTTGCCCGT 46569 || ||||| || Sbjct 10136 GTCTTGCCGGT 10126 >seq928 Length=40960 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| | ||||||| | || || | ||||||||| ||||| | Sbjct 465 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGCCCATCCTCCAACTGCTTGCCAGCGAAGA 406 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| || ||||| |||| || | || ||||||||| |||||| |||| | | Sbjct 405 TCAGACGTTGCTGATCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACATTGT 346 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||||| || || || || | |||||||| |||||||| || || || || | Sbjct 345 CTATCGTGTCGCTAGACTCGACCTCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 286 Query 46584 AG 46585 || Sbjct 285 AG 284 >seq1047 Length=44052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||||| || ||||| || ||||| || ||||| | || ||| Sbjct 5394 ACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGACCATCCTCG 5453 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || |||| ||||||||||| | || | | ||| ||||| ||| Sbjct 5454 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCTTTGTCTATG 5513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226508797160