Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq959 282 4e-71
seq990 118 1e-21
seq928 100 3e-16
>seq959
Length=28360
Score = 282 bits (312), Expect = 4e-71
Identities = 586/859 (68%), Gaps = 19/859 (2%)
Strand=Plus/Minus
Query 132592 ATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCC 132651
||||||||| || ||||| || || || | |||||||| ||||| || || ||| ||
Sbjct 16480 ATCACGCCAGCCTTCTGATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCC 16421
Query 132652 AAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC 132711
|| || ||| | ||| || || || ||||||| | |||||| | | || || |
Sbjct 16420 AACGAGATGTTCTCCATGAAGTCAAATGGGTTGGTGGCGTTGTAATACCTGCTGTTGCCG 16361
Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771
|| ||| || || | |||||||| |||||||||||||| ||||| | | | ||
Sbjct 16360 AGCGCGAGCAGTAGGCGATCGGCCACAAACTCGATGTATTGGCACATGAGGTTGGAGTTC 16301
Query 132772 AGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGC 132830
| || || || || |||| | || || | ||| | || || |||| ||| ||
Sbjct 16300 ATGCCTAGTAGTGCGACAGGCAATGAGTCTGTCACGAACTCCTTT-TCAATGGTGACGGC 16242
Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890
|| |||| ||| ||| || || || || |||| | ||| | || | ||| |
Sbjct 16241 TTCAGTGATGATGCTCCTCACCAGCTCC-CGATCGGGC-TTGTTGCGAAGGTGGGAAAAG 16184
Query 132891 --CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA 132948
|| || || ||||| |||| |||||| || | |||||| || |||||| ||
Sbjct 16183 AGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAG 16124
Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008
|||| ||||||||||| || || ||||||||||| || |||| ||||| || ||
Sbjct 16123 GTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAG 16064
Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCTTT 133067
||||| | |||||| || || |||||||| || || || ||||||||| | |||||
Sbjct 16063 AAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATTCTTA 16004
Query 133068 GCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGAT 133127
| | ||||| ||||||||||| || ||||| | || ||| || || | |||||
Sbjct 16003 TC-GCTAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGAT 15945
Query 133128 GGCGTTCAACAAA--CGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGG 133183
|||||| || | | || || | ||| || ||| | |||||||||||||||
Sbjct 15944 GGCGTTGAATAGATACGTGCGTTGT-TTC---GGTTCGCTGATGTAGGTGTCGATGAGCA 15889
Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243
|| || | || ||||| | |||||||| ||| || |||||||| ||||| || |
Sbjct 15888 GAGAGTAAGTCTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTG 15829
Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303
| ||| | ||||| || | ||| |||||||| || || |||||||| || ||||
Sbjct 15828 CTTCGGGTATTTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGT 15769
Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363
| || || |||||||| || || || |||||| ||||||| || |||| ||
Sbjct 15768 CTGATGCCGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGC 15709
Query 133364 GC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420
|| | |||||| || || || || || || | ||||||| | ||||| || || |
Sbjct 15708 GCTTGTTCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGGAGG 15649
Query 133421 CCTCGGCTTTTTTGTACAT 133439
| || || || ||||||||
Sbjct 15648 CTTCCGCCTTCTTGTACAT 15630
>seq990
Length=11377
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || |||||||||||||| | || || ||| | ||
Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | ||| ||||||| || |||||||| || || | |||||
Sbjct 10390 GACACCATCGACAACG-TGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCA 10448
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | |||| ||| ||||||||||| || || | ||||||||| ||||||||
Sbjct 10449 GCAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAA 10508
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| ||||| ||| || || || | || ||||||
Sbjct 10509 CATTCAAAAAGAAAGTACCCTCCACCTTGTCCTGCGT 10545
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| ||||| ||||| ||||||||| | || ||||| | | |
Sbjct 10786 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC 10845
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | || |||| | || || || | ||||| ||||| || || | |||||
Sbjct 10846 GATACGATTGACAACG-TGAAGTCGAAGATTCAAGACAAGGAGGGCATACCTCCAGACCA 10904
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| | | || | ||||||||| || |||| |||| | || | ||||||||
Sbjct 10905 GCAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGACGTTGTCAGACTACAA 10964
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || |||||| || |||||||||||||||||| || | |||||
Sbjct 10965 TATTCAGAAGGAAAGCACCCTGCATTTGGTGCTGCGTCTGCGTGGCGG 11012
>seq928
Length=40960
Score = 100 bits (110), Expect = 3e-16
Identities = 134/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| |||||||| |||| |||||| | | ||||| |
Sbjct 285 TTCGTCAAGACCCTCACGGGCAAGACCATCACACTCGAGGTCGAGTCTAGCGACACGATA 344
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| ||||| || || |||| || || || |
Sbjct 345 GACAATG--TGAAGAGCAAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTC 402
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| ||||| ||| |||| || | |||||| | ||||||||||||||| |
Sbjct 403 TGATCTTCGCTGGCAAGCAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGA 462
Query 38431 AGG 38433
|||
Sbjct 463 AGG 465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500162277614720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |