Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq959 282 4e-71 seq990 118 1e-21 seq928 100 3e-16 >seq959 Length=28360 Score = 282 bits (312), Expect = 4e-71 Identities = 586/859 (68%), Gaps = 19/859 (2%) Strand=Plus/Minus Query 132592 ATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCC 132651 ||||||||| || ||||| || || || | |||||||| ||||| || || ||| || Sbjct 16480 ATCACGCCAGCCTTCTGATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCC 16421 Query 132652 AAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC 132711 || || ||| | ||| || || || ||||||| | |||||| | | || || | Sbjct 16420 AACGAGATGTTCTCCATGAAGTCAAATGGGTTGGTGGCGTTGTAATACCTGCTGTTGCCG 16361 Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 || ||| || || | |||||||| |||||||||||||| ||||| | | | || Sbjct 16360 AGCGCGAGCAGTAGGCGATCGGCCACAAACTCGATGTATTGGCACATGAGGTTGGAGTTC 16301 Query 132772 AGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGC 132830 | || || || || |||| | || || | ||| | || || |||| ||| || Sbjct 16300 ATGCCTAGTAGTGCGACAGGCAATGAGTCTGTCACGAACTCCTTT-TCAATGGTGACGGC 16242 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 || |||| ||| ||| || || || || |||| | ||| | || | ||| | Sbjct 16241 TTCAGTGATGATGCTCCTCACCAGCTCC-CGATCGGGC-TTGTTGCGAAGGTGGGAAAAG 16184 Query 132891 --CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA 132948 || || || ||||| |||| |||||| || | |||||| || |||||| || Sbjct 16183 AGCAGACAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAG 16124 Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008 |||| ||||||||||| || || ||||||||||| || |||| ||||| || || Sbjct 16123 GTCAGACCGGGCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAG 16064 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCTTT 133067 ||||| | |||||| || || |||||||| || || || ||||||||| | ||||| Sbjct 16063 AAGAAAATGCCCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATTCTTA 16004 Query 133068 GCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGAT 133127 | | ||||| ||||||||||| || ||||| | || ||| || || | ||||| Sbjct 16003 TC-GCTAATCCATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGAT 15945 Query 133128 GGCGTTCAACAAA--CGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGG 133183 |||||| || | | || || | ||| || ||| | ||||||||||||||| Sbjct 15944 GGCGTTGAATAGATACGTGCGTTGT-TTC---GGTTCGCTGATGTAGGTGTCGATGAGCA 15889 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 || || | || ||||| | |||||||| ||| || |||||||| ||||| || | Sbjct 15888 GAGAGTAAGTCTCAGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTG 15829 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 | ||| | ||||| || | ||| |||||||| || || |||||||| || |||| Sbjct 15828 CTTCGGGTATTTGCACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGT 15769 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 | || || |||||||| || || || |||||| ||||||| || |||| || Sbjct 15768 CTGATGCCGCAAAAAAGGCGAGGACATGAGAGATGAAGAAACGCTCGTCATCATTCAGGC 15709 Query 133364 GC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 || | |||||| || || || || || || | ||||||| | ||||| || || | Sbjct 15708 GCTTGTTCCAGTCATGCAAATCTTTTGAAAGATCGATCTCCTCGGCCGTCCAGAAGGAGG 15649 Query 133421 CCTCGGCTTTTTTGTACAT 133439 | || || || |||||||| Sbjct 15648 CTTCCGCCTTCTTGTACAT 15630 >seq990 Length=11377 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || |||||||||||||| | || || ||| | || Sbjct 10330 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACACTTGAGGTTGAGTCGTCC 10389 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | ||| ||||||| || |||||||| || || | ||||| Sbjct 10390 GACACCATCGACAACG-TGAAATCGAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCA 10448 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| ||||||||||| || || | ||||||||| |||||||| Sbjct 10449 GCAGCGCTTGATTTTCGCTGGCAAACAGCTTGAGGATGGCCGCACCCTCTCTGACTACAA 10508 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||| ||| || || || | || |||||| Sbjct 10509 CATTCAAAAAGAAAGTACCCTCCACCTTGTCCTGCGT 10545 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||| ||||||||| | || ||||| | | | Sbjct 10786 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACCATCACCCTAGAAGTCGAATCGAGC 10845 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | || || || | ||||| ||||| || || | ||||| Sbjct 10846 GATACGATTGACAACG-TGAAGTCGAAGATTCAAGACAAGGAGGGCATACCTCCAGACCA 10904 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||||||||| || |||| |||| | || | |||||||| Sbjct 10905 GCAGAGATTAATCTTCGCGGGCAAGCAATTGGAAGACGGTAGGACGTTGTCAGACTACAA 10964 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| || |||||||||||||||||| || | ||||| Sbjct 10965 TATTCAGAAGGAAAGCACCCTGCATTTGGTGCTGCGTCTGCGTGGCGG 11012 >seq928 Length=40960 Score = 100 bits (110), Expect = 3e-16 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| |||||||| |||| |||||| | | ||||| | Sbjct 285 TTCGTCAAGACCCTCACGGGCAAGACCATCACACTCGAGGTCGAGTCTAGCGACACGATA 344 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||| || || |||| || || || | Sbjct 345 GACAATG--TGAAGAGCAAGATCCAAGACAAGGAGGGCATCCCACCCGATCAGCAACGTC 402 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| ||||| ||| |||| || | |||||| | ||||||||||||||| | Sbjct 403 TGATCTTCGCTGGCAAGCAGTTGGAGGATGGGCGCACTTTGTCCGACTACAACATCCAGA 462 Query 38431 AGG 38433 ||| Sbjct 463 AGG 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162277614720