Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq32 102 6e-16 seq1399 89.7 4e-12 >seq32 Length=30463 Score = 102 bits (112), Expect = 6e-16 Identities = 408/635 (64%), Gaps = 12/635 (2%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || || || |||||||| ||||| | || | || | ||| | | | || | |||| Sbjct 5882 CGGTTGTCGAAGTCTTCACCACCCAAGTGCGTGTCACCGGCCGTGGATTTGACCTCGAAA 5941 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | || || || | | | | | ||||| || |||||||||| || ||||| Sbjct 5942 ATGCCCTCCTCGATGGTAAGTAAGGACACATCGAAAGTGCCACCACCCAAGTCGAAAATC 6001 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | ||| ||| || || || || || || || || |||| || || || || Sbjct 6002 AATACGTTCCGCTCGCCTTCAACCTTCTTGTCGAGGCCGTAGGCAATGGCTGCGGCGGTC 6061 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || ||||| | ||| ||||| | || || || || |||||||| || ||| Sbjct 6062 GGCTCGTTGATAATACGCAACACATTCAAGCCGGCGATGAGACCAGCATCTTTGGTTGCT 6121 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 |||||||| || ||||| |||||||| || ||||| || || |||| | || Sbjct 6122 TGTCTTTGAGAGTCGTTGAAATATGCCGGCACAGTGATGACAGCATTGTTGACAGTGCCG 6181 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | || | || |||| | ||| || | | | ||| || || || | |||| Sbjct 6182 CCGAGGTATGATTCAGCAGTTTCTCGCATCTTGGTGAGCACCATGGAAGAGATCTCTTCT 6241 Query 518381 GGG--GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 518438 ||| |||| | || || |||| | |||| | ||| | | || Sbjct 6242 GGGCTGAATTCTTTCTGCTCTC-CCTTGA-ACTCGACTTGGATGATTGGCT--TGCCCTG 6297 Query 518439 C--ATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTT--TGGTCATTA 518494 | | || ||||| || || ||| |||||||||| ||| ||||| |||| || Sbjct 6298 CTTCTCGATTACTTTGAAAGGGAAGTGCTTCATATCTGCTTG--CACTTCAGGGTCGTTG 6355 Query 518495 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCT 518554 || | | || || | ||| || ||||| |||| || || ||| || ||||| | Sbjct 6356 AATTTCCGTCCGATGAGTCGCTTCGCATCGAAAACTGTGTTCTGTGGGTTCATTGCGACC 6415 Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 || | || || ||||| ||||||||| | || || ||||| |||| ||| | || || Sbjct 6416 TGGTTCTTCGCGGCATCACCAATCAGACGCTCAGTGTCTGTGAATGCGACAAACGACGGC 6475 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 |||||||| || ||||| || || ||||| || || Sbjct 6476 GTTGTGCGGTTGCCTTGGTCGTTTGCAATGATCTC 6510 >seq1399 Length=32242 Score = 89.7 bits (98), Expect = 4e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 || ||||| || ||||| || | |||| | || ||||| |||||||| | |||||| Sbjct 11377 GCGGCAGCTGTCGGTTCGTTGACGATTCGTAGCACGTTAAGCCCAGCAATAGTACCTGCA 11436 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCA 518308 || || || || | ||||| ||||| |||||||| ||||| |||| ||||||| Sbjct 11437 TCCTTTGTCGCAGCACGTTGTGCGTCGTTGAAATATGCCGGAACGGTAACGACGGCATTT 11496 Query 518309 GTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGAT 518368 || || | | || | ||| || ||| || ||||| || | ||||||||||| Sbjct 11497 GTGACCTTCTCGCCTAGATATGCCTCTGCAACTTCCTTCATCTTGCCCAAAATCATTGAA 11556 Query 518369 GAAATTTGTTCTGG 518382 |||| || ||| || Sbjct 11557 GAAACTTCTTCGGG 11570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780738883996198