Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq32 300 2e-76 seq1682 163 4e-35 seq1295 131 2e-25 seq1399 96.9 4e-15 >seq32 Length=30463 Score = 300 bits (332), Expect = 2e-76 Identities = 493/706 (70%), Gaps = 10/706 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||||||||||||||| || || || || || | |||||| || || || || Sbjct 5888 TCGAAGTCTTCACCACCCAAGTGCGTGTCACCGGCCGTGGATTTGACCTCGAAAATGCCC 5947 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || ||||| || || |||||||||| ||| ||||| | |||| Sbjct 5948 TCCTCGATGGTAAGTAAGGACACATCGAAAGTGCCACCACCCAAGTCGAAAATCAATACG 6007 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| ||| | || ||||| ||||| ||||| || || || || || || || || Sbjct 6008 TTCCGCTCGCCTTCAACCTTCTTGTCGAGGCCGTAGGCAATGGCTGCGGCGGTCGGCTCG 6067 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| || ||| |||| ||| || || | |||||||| || ||||||| Sbjct 6068 TTGATAATACGCAACACA-TTCAAGCCGGCGATGAGACCAGCATCTTTGGTTGCTTGTCT 6126 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| || ||||| || || ||||| || || | ||| || | |||| | ||||| Sbjct 6127 TTGAGAGTCGTTGAAATATGCCGGCACAGTGATGACAGCATTGTTGACAGTGCCGCCGAG 6186 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || ||||| || | ||| ||| ||||| || ||||| || || |||||||| | Sbjct 6187 GTATGATTCAGCAGTTTCTCGCATCTTGGTGAGCACCATGGAAGAGATCTCTTCTGGGCT 6246 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCC-GCAGCACCGG 7874 || | |||| || || || || || |||| || || || || || || | | Sbjct 6247 GAATTCTTTCTGCTCTCCCTTGAACTCGACTTGGATGATTGGCTTGCCCTGCTTCTC--- 6303 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 ||| || || | | | | |||||||| |||| || | |||| || || | Sbjct 6304 -GATTACTTTGAAAGGGAAGTGCTTCATATCTGCTTGCACTTCAGGGTCGTTGAATTTCC 6362 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 |||||| || ||||| ||||| ||||||||||| | |||||||| || ||||||| Sbjct 6363 GTCCGATGAGTCGCTTCGCATCGAAAACTGTGTTCTGTGGGTTCATTGCGACCTGGTTCT 6422 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 |||| || || || || ||||| || | | || || || ||||| |||| || || | Sbjct 6423 TCGCGGCATCACCAATCAGACGCTC---AGTGTCTGTGAATGCGACAAACGACGGCGTTG 6479 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | || || ||||||||||| ||||| || || | |||||| | | ||||||| |||| Sbjct 6480 TGCGGTTGCCTTGGTCGTTTGCAATGATCTCGATGCGGTCATCACGGAAGACGCCCACGC 6539 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTT 8160 | || || || || || || ||||| ||||||||| | | ||| || Sbjct 6540 ATGAGTAGGTCGTGCCCAAGTCAATGCCGATTGCTGGGGCCATGTT 6585 Score = 228 bits (252), Expect = 1e-54 Identities = 547/827 (66%), Gaps = 3/827 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 |||||||| | || ||||| || || || | ||| || || || || || || Sbjct 4942 TCATCTTCGGCCTTGTACTTCTCAGCCTCCGCAAGCATGCGCTCGATTTCCTCCTTGGAC 5001 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || || ||||| | || || || | | | || || || Sbjct 5002 AGACGACCCTTGTCGTTGGTGATAGTGATCTTGTTGGTCTTTCCAGTGCCTTTCTCAACA 5061 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| |||||||| ||||| | ||||| | || | ||| || ||| | Sbjct 5062 GCAGAGACGTTCATGATACCATTGGCATCCATGTCGAAGGTAACCTCAATCTGAGGTACA 5121 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||| || | ||| || || || | |||||| | || || ||| |||| || | Sbjct 5122 CCACGCGGAGCAGGTGGGATGCCAGTGAGCTCAAATTTGCCGAGCAAATTGTTGTCTTTG 5181 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | ||| ||||| |||||||||| || ||| | ||||| || || Sbjct 5182 GTGCGAGCACGCTCACCCTCATAGACTTGGATGAGCACACCCGGTTGGTTGTCGGAGAAT 5241 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | |||||| | || || || || || | | || | ||||||| Sbjct 5242 GTGGAGAACACCTCAGATTTCTTCGTCGGGATAGTGGTGTTGCGCTTGATCAGCGGGGTC 5301 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | ||| || || || | || | ||||| || || || || | ||| | | Sbjct 5302 ATCACACCGCCAGCCGTCTCAATACCGACAGACAATGGCGTAACATCGAGGAGCAGGATC 5361 Query 6989 TCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | || | | || ||||| | | ||| ||||| || || | || ||| Sbjct 5362 TCATTGGTTGACTTGCTCGAGGTGTCACCAGAAAGGATAGCGGCCTGAACAGCTGCGCCG 5421 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || ||||| || || || || | || || | || || || || || | || Sbjct 5422 TAGGCAACAGCCTCGTCTGGATTGATGGACTTGTTGGGCTCCTTGCCATTGAAGAAGTCG 5481 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 |||| ||| | ||||| ||||| || || || || |||||||||| |||||||| | | Sbjct 5482 GATACCATCTTCTGAATCTTCGGAATACGGGTTGAACCACCGACCAGTACGATTTCGTGC 5541 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || |||||||| | ||| || || |||||| || ||||| Sbjct 5542 ACGGAGGACTTGTCGATCTTGGCGTCACGGAGGACACGTTCGACTGGCTCCATTGTGGAT 5601 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| |||| ||||| || || |||||||| ||||| || ||||||||| Sbjct 5602 CGGAAGAGATCCTGGCACAACTCCTCGAAGCGAGCACGGGTGATGGAAGTGTAGAAATCA 5661 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | ||| || || | ||| || || ||||||| ||| ||||| | ||||| || |||||| Sbjct 5662 ATGCCCTCATACAGCGAGTCGATCTCAATGGATGTCTGTGCGGATGAAGACAATGTTCGC 5721 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 || || |||||||| || ||||| |||||||||||||| || | ||| Sbjct 5722 TTCGCCCGCTCACAGGCGGTTCGCAAACGACGAAGGGCGCGTGCGTT 5768 >seq1682 Length=82147 Score = 163 bits (180), Expect = 4e-35 Identities = 368/544 (68%), Gaps = 17/544 (3%) Strand=Plus/Plus Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305 ||| ||||| | ||| || ||||| || | ||||| |||| ||||| | || || Sbjct 29130 TTCTTCAAATCTTGCGCGAGTAATACTTGCGTTAAAATCTTCGCCATCGTACAGTGAGTC 29189 Query 7306 AATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 |||||| | || || || | |||| | ||| || ||||| || ||||| || || Sbjct 29190 AATTTCGACAGTAGTCTGAGTACCGTTGGAGAGG--GTACGCTTGGCACGCTCGCAGGCT 29247 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 ||||| | || || || || || || | | || || |||||||| || |||| Sbjct 29248 GTTCGCAGGCGGCGCAGCGCTCGGGGATCATTAGAGATGTCTTTCTTGGTCTTGCGTTGG 29307 Query 7424 AACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 || || | ||| || |||| | || | | ||| || || | ||||| | ||| || Sbjct 29308 AATTCCTTCTTGAAATGCTCGA-GAAGGTTGGTATCAAAGTCCTGCCCACCAAGGTGAGT 29366 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 || || || || || || || ||| | ||||||| ||| | | | ||| ||||| Sbjct 29367 GTCACCAGCAGTAGCCTTTACAGTAAACACGCCTCCTTGAATATGCAGAAGCGAGACATC 29426 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTT------CGTATCGTCGTCTTTGTT 7596 || || |||||||| || || | || || ||||| | ||||| | ||| | Sbjct 29427 GAAAGTGCCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTATCG--GACTT-GCC 29483 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGT 7655 ||||||||||||| |||||||| || || || ||||| || || || || ||| | Sbjct 29484 GGCGCCGAGACCGTACGCAATAGCCGCAGCGGTAGGCTCATTGATGATGCGGAGCACA-T 29542 Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 | ||||||||||| | | ||||| ||||| ||||||| ||| ||||| ||||| | Sbjct 29543 TGAGGCCAGCAATGGCACCAGCATCCTTCGTGGCTTGTCTTTGATTGTCGTTGAAGTACG 29602 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 | || ||||| | ||| || | || ||||||||| || || | || ||||| | || | Sbjct 29603 CGGGCACCGTGATGACGGCCTTCGAGACTTTCTTGCCCAGCTTCGTCTCCGCAACCTCCT 29662 Query 7776 TCAT 7779 |||| Sbjct 29663 TCAT 29666 >seq1295 Length=44835 Score = 131 bits (144), Expect = 2e-25 Identities = 662/1041 (64%), Gaps = 23/1041 (2%) Strand=Plus/Plus Query 105124 GGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCATTTTCGTAACACGA 105183 || ||| ||| |||| |||| |||||| ||||| ||||||| || ||||| | Sbjct 16965 GGATAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGTAACTTCA 17024 Query 105184 TGTAACT-CTTCATGGTTAAACTCGTTCTTCTCGACATCAACGTATTTTGGTAACGCGAT 105242 || | | ||| | | ||||| | || || | ||| |||||| | ||||| || | Sbjct 17025 TGAAGTTTCTTGAAATTGTAACTC-TCATTTTCAATATCCACGTATGTGGGTAAAGCCAG 17083 Query 105243 TGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAACTCCAGAATTTCTGTACA 105302 ||||| ||||| || || ||| || || | || |||||| ||| || || || Sbjct 17084 GGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCA 17143 Query 105303 CAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTT-TCATTACACGCGT 105361 || || || || ||| ||||||| || ||| ||||| || ||| | || || || | Sbjct 17144 CAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCA-GCAT 17202 Query 105362 CTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAATTGCTTTCCAAA 105421 | || || ||| | || || || || || |||| | | | ||||| | ||| | Sbjct 17203 CCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATA 17262 Query 105422 TCTCCGAAGCTGGTACAACTTTAGTTGCGAT-ACCTTCAGATTCGTATTTCTCGTAAAGA 105480 | | || | ||| | | | | | ||| || |||||||| ||||| ||| Sbjct 17263 GTTTCTGCGCACGCACAG-TCTCGCGACCACGACCCTCGCGTTCGTATTGTTCGTAGAGA 17321 Query 105481 TCTTCAAACTCTTTACCGTACACGTCTGAAAGACC----CTTTGCCTGATCAGGACAAAA 105536 | || |||| || || ||||| || | ||| || | || | || ||||| | Sbjct 17322 GCCTCGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATT-CGTGC---GGACACAT 17377 Query 105537 CAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGC 105596 ||| | ||| | | | || || |||||||||||||| ||||| ||||| | || Sbjct 17378 CAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGC 17437 Query 105597 TGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAA 105656 | || ||||| ||| | | ||||| | || || ||| || | ||||| || Sbjct 17438 GTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAA 17497 Query 105657 ATCGAGAATA--TCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTAC----G 105710 ||||||| || || ||||| || || | ||||| |||| | || || | Sbjct 17498 --GGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTG 17555 Query 105711 ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAAT 105770 ||| | |||||| |||||| | || || ||| || || || | ||| || | | Sbjct 17556 TTGCCAC-CTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAA 17614 Query 105771 ACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAAC 105830 || | || ||||||||||| |||| ||||| || |||| || | ||| || Sbjct 17615 TCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTAC 17674 Query 105831 GTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTA 105890 | | || ||||| ||||| ||| ||| || || ||| | || || || Sbjct 17675 ATTGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATA 17734 Query 105891 AATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCT 105950 ||| || |||||||| || ||||| | |||||| |||||| || | || ||| | Sbjct 17735 AATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAATTGGGCGGA 17794 Query 105951 GGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGC 106010 ||||| || || ||||||| ||||||| |||||| |||| | ||||| | Sbjct 17795 TGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTTCGACATGAG 17854 Query 106011 TTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070 | ||| || || | | || || || | || || ||||| | || || ||||| Sbjct 17855 GTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGCAACACGCAT 17914 Query 106071 ATAGAGATATTGGGGTGTTTCAATAATTTCACCGTCAATTTTCTGGAGATACCCTTTTTC 106130 | | ||| ||| | || ||||| ||||||||| || ||||||| ||| Sbjct 17915 GATCATGTGTTGCGGTCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATATGAGCGTTC 17974 Query 106131 AAGTGTTTTTAAACCAAAATA 106151 ||| || || || |||||||| Sbjct 17975 AAGAGTCTTGAAGCCAAAATA 17995 >seq1399 Length=32242 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/366 (66%), Gaps = 9/366 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || |||||||| || | || || || || || || || | || ||||| | || Sbjct 11217 ATCAAAGTCTTCACCGCCGAGATGAGTGTCACCAGCAGTTGCCTGCACCTCAAACACGCC 11276 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | | || | ||||||||||| ||||| ||||| || || | | || | Sbjct 11277 TTGATCGACCGTCAAGACGGAAACATCAAAGGTACCGCCACCGAGATCGTACACGACGAT 11336 Query 7576 GTTCGTATCGTCGTCTTTGT---TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || | ||| |||| | |||| || | ||||| || | || || || || || Sbjct 11337 -TTGG---CGT--TCTTGATCCGTCTTGTCCAATCCGTATGCTAGTGCGGCAGCTGTCGG 11390 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||| || | || || || ||| || ||||||||||| | ||||| || ||||| Sbjct 11391 TTCGTTGACGATTCGTAGCACGTTAAGCCCAGCAATAGTACCTGCATCCTTTGTCGCAGC 11450 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| | ||||| || || ||||| || || ||||| || | ||||| |||| || Sbjct 11451 ACGTTGTGCGTCGTTGAAATATGCCGGAACGGTAACGACGGCATTTGTGACCTTCTCGCC 11510 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || || | || ||||| ||| | || ||| || |||| ||||| | Sbjct 11511 TAGATATGCCTCTGCAACTTCCTTCATCTTGCCCAAAATCATTGAAGAAACTTCTTCGGG 11570 Query 7813 CGCAAA 7818 || ||| Sbjct 11571 CGTAAA 11576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119438393720