Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1295 192 7e-44 seq959 114 2e-20 seq444 84.2 3e-11 >seq1295 Length=44835 Score = 192 bits (212), Expect = 7e-44 Identities = 901/1396 (65%), Gaps = 51/1396 (4%) Strand=Plus/Minus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||||| || ||| | ||||| || || ||||| || || ||| | |||| Sbjct 17922 ACATGATCATGCGTGTTGCGGTGGGTATACACGGCGAAGACATCGAGGCTGCAATCGAGA 17863 Query 111679 CATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTTCAACGCT 111737 | ||| || ||||| ||| |||| || || |||||||||| |||| || Sbjct 17862 CCTACAACCTCATGTCGAACAAGTAC-TTCACTCATGCTTCACCAACCCTGTTCATGGCC 17804 Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATC 111797 || |||||| ||||| || | |||||| | |||| | |||||||| ||| Sbjct 17803 GGCACACCATCCGCCCAATTGGCTTCATGTTTCTTGATTGACATGAAGGAGGACAGTATC 17744 Query 111798 AATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATC 111857 | |||||||| | |||||| | ||| ||| ||||||||| ||||||||||| Sbjct 17743 GAGGGCATTTATGACACTCTGAAAACATGCGCCATGATCTCAAAGAATGCTGGTGGTATA 17684 Query 111858 GG----GATGCACATC-CATGATGTCAGAGCCAACA-AGTCTCGTATTAGAGGTACAAAT 111911 || ||| ||| | ||| || | | ||||| ||| |||| | || |||||| Sbjct 17683 GGTCTCAATGTACACCGCAT----TC-GCG-CAACAGGGTCGTATATTGGTGGCACAAAT 17630 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || ||| | || | | || |||||||| |||| ||| ||| ||||| ||||| Sbjct 17629 GGAACTTCAAACGGATTGGTACCTATGCTTCGTGTATACAACAACACTGCGCGGTATGTC 17570 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | |||| ||| ||||| | || | | || ||||||||||||| ||||| Sbjct 17569 GATCAAGGTGGCAACAAGCGTCCC---GGTGCCTTTGCCATCTATCTTGAGCCGTGGCAT 17513 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 ||||| || | ||||| || |||| ||||| || | || || | | |||| Sbjct 17512 GCGGACATATTCTCCTTCCTCGACCTGCGCAAGAACCATGGCAAAGAAGAAG-TCCGTGC 17454 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 ||||| || |||| ||| || ||||| ||||| | |||||||| | || ||| ||| Sbjct 17453 TCGCGACCTTTTCTACGCGCTTTGGATCCCAGACTTGTTCATGAAACGGGTGGAGCAGAA 17394 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 ||| ||| || | | ||||| || || || || || || | |||| || | Sbjct 17393 CAGCACATGGACTTTGATGTGTCCGCACGAATGC-CCTGGCCTTGCTGATGTGTATGGGG 17335 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGC 112263 | |||| || || |||||| | | ||||| || |||| | | ||| |||| Sbjct 17334 AAAAGTTCGAGGCTCTCTACGAACAATACGAACGCGAGGGTCGTGGTCGCGAGACTGTGC 17275 Query 112264 CAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 || || | | | ||| | || || ||| || ||||||| ||||| ||||| || | Sbjct 17274 GTGC-GCAGAAACTATGGTACGCAATCCTCGAGGCTCAAACGGAGACAGGTACTCCCTTC 17216 Query 112323 ATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||| || || || | ||| || || ||| || || || || | ||| || Sbjct 17215 ATGTGCTATAAGGATG-CTGCAAACAGAAAATCCAACCAGAAAAACCTTGGTACCATTCG 17157 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 ||||||||| || || || || |||| | || | | |||||| ||||| || Sbjct 17156 CTCTTCCAACCTGTGCACTGAGATTATGGAGTACACTGCCCCTGATGAGGTCGCTGTCTG 17097 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GAT 112499 || || ||||| | ||| | |||| || |||||| | || || || | || || Sbjct 17096 CAATCTTGCATCCCTGGCTTTACCCACATACGTGGAT--ATTGAAAATGAGAGTTACAAT 17039 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | ||||| || |||||||| || || || |||||| | |||| |||| ||| Sbjct 17038 TTCAAGAAACTTCATGAAGTTACTAAGGTGGTTACGAAAAACTTGAACAAGATTATCGAT 16979 Query 112560 AGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 | || ||| ||||| ||| ||||| || ||| | | ||||| || ||||| Sbjct 16978 ATCAACCATTATCCCGTGCCAGA-AGCTCGCAAGAGCAATTTACGCCACCGCCCGATTGG 16920 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 112678 | |||||| || || || |||| ||| || | |||| | || || || Sbjct 16919 CTTGGGTGTCAGTGGCCTGGCCGATGCTTTCCTTGCTCTTCGCATGCCGTTCGACTCTCC 16860 Query 112679 CGAAGC--GAAGG-AAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 |||||| || || || || | | || || ||||| || ||||||| || | || Sbjct 16859 CGAAGCAAGACGGCTAAACATT---CAGATCTTCGAGACCATTTATCACGGAGCGTTGGA 16803 Query 112736 GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG- 112794 ||| | || |||| ||| ||||||||||| || | | || || || | Sbjct 16802 GGCCTCCTGCGAACTGGCGGAGCAACTCGGTCCATATGAGACTTACGCTGGCTCCCCTGT 16743 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGAC 112853 | || |||||| || |||| || ||||||| |||| |||| | || || ||| Sbjct 16742 CAGCA-AAGGGGAACTGCAATACGACATGTGGG-GCGTGACGCCAACCGATCTCTGGGAC 16685 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 ||||| | ||||||| || || | || | || ||| || || || ||| Sbjct 16684 TGGGATTCACTCAAGGCGAAGATTGCACAGCACGGAGTCCGCAAC--TCATTGCTGGTGG 16627 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||||||||| || || | || ||| |||| |||||||| || || || | Sbjct 16626 CGCCCATGCCAACAGCGTCGACTTCGCAGATCATGGGCTTCAATGAATGTTTCGAGCCGT 16567 Query 112972 ACACGACGAACATCTA 112987 |||| ||||||| || Sbjct 16566 ACACTTCGAACATTTA 16551 >seq959 Length=28360 Score = 114 bits (126), Expect = 2e-20 Identities = 172/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 102099 GCCATCCA-AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT-- 102155 |||||| | |||| | ||||| || ||||| ||||||||||| || ||| || Sbjct 15942 GCCATCGACAACA-TCCCATGCATCGGTAAGAAGGCGGATTGGGCGCTGCGATGGATTAG 16000 Query 102156 -GATACAAAGTCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTA 102213 |||| || ||| ||||| |||| || ||| | || || || ||| ||||| | Sbjct 16001 CGATAAGAATTCGACGTTCG---GCTGT-CGTCTCGTTGCTTTCGCCGCTGTAGAGGGCA 16056 Query 102214 TCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAG 102273 | ||||||||| | |||||| | |||| |||||||| ||||| ||||||||||| | Sbjct 16057 TTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTCAAAAAGCGTGGTCTCATGCCCG 16116 Query 102274 GTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||| |||||||||||||| || ||||| ||||| | ||| ||| || || Sbjct 16117 GTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAGGGCATGCACACAGACTTCGC 16174 >seq444 Length=108798 Score = 84.2 bits (92), Expect = 3e-11 Identities = 253/385 (66%), Gaps = 23/385 (6%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||| | ||||||||| |||||||| | | ||| || | ||| || | ||| | || || Sbjct 52334 GATATGACGATCAAAACGACCTGGTCTCATGAGAGCTTTATCTAGAACATCTGCTCGGTT 52393 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCAAA 15995 ||| | || | |||||| | | || | || | | ||| |||||||||||||| | | Sbjct 52394 TGTTCCTGCCAAGACAACGA--CTTGCTCCGAGGTGTTAAAGCCATCCATCTCTGTGAGA 52451 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC--AGCACTGCGTT 16053 | || || | ||| || |||||||| || || |||||| | ||||| || Sbjct 52452 ATTTGATTGAGAGTAGACTCTCGTTCATCGTT-GC-----CACCACCAAACGACTGCTTT 52505 Query 16054 GC-------TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCG 16106 || || || | ||| ||||| ||||| ||||||| |||||| || ||||| Sbjct 52506 GCCCTCGATTTGCCTATGGCGTCAATTTCATCTATGAAGATGATGCAAGGGGTATTTTTT 52565 Query 16107 CGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCA 16164 | || | || || || ||| || |||| | ||| || || || |||||||||| Sbjct 52566 CTCGCATTCTGGAATAGGTCTCGT--ACTCTTGACGGGCCAACGCCGACGAACATCTCCA 52623 Query 16165 CAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGG 16224 |||| | | |||| || ||| || ||| ||| || || ||| | || | Sbjct 52624 CAAACTCGGAACCGGAGACGGAGAAGAATGGAACACCAGACTCTCCTGCAGTTGCCTTTG 52683 Query 16225 CGAGAAGAGTCTTACCCGTACCTGG 16249 | || || || || |||||||| || Sbjct 52684 CCAGCAGCGTTTTCCCCGTACCAGG 52708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729341131760