Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1295 183 4e-41 >seq1295 Length=44835 Score = 183 bits (202), Expect = 4e-41 Identities = 1055/1653 (64%), Gaps = 51/1653 (3%) Strand=Plus/Plus Query 109506 CGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG 109565 ||| ||||| || ||||||||| || || ||||| ||||| | | ||| || Sbjct 16304 CGAATGAGATTGGTCGATGAATGCGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTG 16363 Query 109566 GCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTT 109625 || |||||||| ||||||||||| | |||| ||||| ||||||| | |||| Sbjct 16364 ACTGATTTCCCATACAGTCTTGTAAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCG 16423 Query 109626 TTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGAC 109685 |||| ||| || ||| | | ||| | | |||||| | | |||||||||||| Sbjct 16424 CTGAACAGACCCGCCATCTGCAATGATGCGGTTCTTCATGTTGTCTGACCAGAGACCGCG 16483 Query 109686 CTTTTTGAGATCGTCAA-CAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTG 109743 | || || | | ||| ||| ||||||||| || || ||||| || Sbjct 16484 ATCGACAAGGTCCTTTAGCAACCATGG--GTTGACCACCTGGAACTCGCCAGCTAGAACA 16541 Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 || || ||| ||||| | ||||| || |||||||| |||||| ||| | ||| || Sbjct 16542 CGACGACTGTAAATGTTCGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGC 16601 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT-CTT 109862 | ||| || ||||| |||||||| |||| || | ||| |||| || ||| || Sbjct 16602 GAAGTCGACGCTGTTGGCATGGGCGCCACCAGCAATGAGTTGCGGA----CTCCGTGCTG 16657 Query 109863 TACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAAT---TTAGTCTCACCATC 109919 | | || ||| ||| || |||| | | || | || || | |||| | Sbjct 16658 TGCAATCTT-CGCCTTGAGTG--AATCCCA--GTCCCAGAGATCGGTTGGCGTCACGC-C 16711 Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGTACG 109978 |||||| || ||| ||| | |||| || | |||| || || | || |||| || | Sbjct 16712 CCACATGTCGTATTGCAGTTC-CCCTTTGCTGACAGGGGAGCCAGCGTAAGTCTCATATG 16770 Query 109979 ACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAA 110038 || ||| |||| ||| | || ||||| | || | ||||| || ||||| | Sbjct 16771 GACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCAACGCTCCGTGATAAATGGTCTCGA 16830 Query 110039 AAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAA 110098 | || ||| || | | | | || | ||||||| || | | | | || | Sbjct 16831 AGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGAGTCGAACGGCATGCGAAGAGCAAGGA 16890 Query 110099 ACACATCCGCTAGACC-CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGT 110157 | |||| || || || |||| |||| | ||||| ||||| || | || || | Sbjct 16891 AAGCATCGGCCAGGCCACTGA-CACCCAAGCCAATCGGGCGGTGGCGTAAATT---GC-T 16945 Query 110158 CGAGC-AGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 | || || |||| ||||| ||| |||| ||||| | | || | || ||||| Sbjct 16946 CTTGCGAGCTTCTGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGT 17005 Query 110214 CACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGAC 110273 || ||| || | |||||| ||||| | | ||| | | | | | || ||| || Sbjct 17006 AACCACCTTAGTAACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAATATCCAC 17065 Query 110274 ATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTA 110333 ||| |||| | ||| | || ||||||||||| |||| ||| || | | ||||| Sbjct 17066 GTATGTGGGTAAAGCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTA 17125 Query 110334 TTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGA 110393 |||| ||| || || |||| ||||||| |||| ||| | ||| ||||| || || Sbjct 17126 CTCCATAATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGA 17185 Query 110394 TTTGGAG-TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 ||| | ||||| |||||||||||| |||| | || ||||| || ||||| || | || Sbjct 17186 TTTTCTGTTTGCA-GCATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCT 17244 Query 110453 TGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCC 110511 ||| || || | ||||| || || || | ||||| || | | |||| || Sbjct 17245 CGAGGATTGCGTACCATAGTTTCTGC-GCACGCACAGTCTCGCGACCACGACCCTCGCGT 17303 Query 110512 TCGTACTTGGT-GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570 ||||| ||| | ||| | |||| || | | || |||||||||| ||| || || Sbjct 17304 TCGTA-TTGTTCGTAGAGAGCCTCGAACTTTTCCCCATACACATCAGCAAG-GCCAGGGC 17361 Query 110571 CTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 || || ||||| | | | ||| | | || ||| |||| |||||||||| || Sbjct 17362 ATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGT 17421 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 | || ||||| | ||| |||||||||| || ||| | ||||| | || ||||| Sbjct 17422 CTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCT 17481 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 ||| || || | ||| | || |||| ||||| || || ||||||| || | || Sbjct 17482 TGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGG 17541 Query 110750 ATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 || ||| || | || | ||||| || || ||| ||| | || | | Sbjct 17542 CACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAA 17601 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866 ||||||| | | ||| | || |||||||| || | ||| ||| | || | Sbjct 17602 GCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGC 17661 Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTC 110924 ||||| ||| | || | ||| |||||||| || ||| || | | ||| | Sbjct 17662 GAATGCGGTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTT 17721 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | |||||| ||||||| || || || || |||| || |||| | || || || Sbjct 17722 TCAGAGTGT--CATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGA 17779 Query 110985 AGACATCTGAGGACGA-GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACA 111043 || || || || || || || || || |||| || || |||| |||||| ||| | Sbjct 17780 AGCCAATTG-GGCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGA--A 17836 Query 111044 GACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAAT 111101 | |||| ||||| |||||| || |||| ||| | | |||| ||||| || Sbjct 17837 GTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTAT 17896 Query 111102 ACCAATGGCAACTCGCATGAACATATATTGAGG 111134 ||| | ||||| ||||||| ||| | ||| || Sbjct 17897 ACCCACCGCAACACGCATGATCATGTGTTGCGG 17929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963609417400