Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 183 4e-41
>seq1295
Length=44835
Score = 183 bits (202), Expect = 4e-41
Identities = 1055/1653 (64%), Gaps = 51/1653 (3%)
Strand=Plus/Plus
Query 109506 CGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG 109565
||| ||||| || ||||||||| || || ||||| ||||| | | ||| ||
Sbjct 16304 CGAATGAGATTGGTCGATGAATGCGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTG 16363
Query 109566 GCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTT 109625
|| |||||||| ||||||||||| | |||| ||||| ||||||| | ||||
Sbjct 16364 ACTGATTTCCCATACAGTCTTGTAAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCG 16423
Query 109626 TTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGAC 109685
|||| ||| || ||| | | ||| | | |||||| | | ||||||||||||
Sbjct 16424 CTGAACAGACCCGCCATCTGCAATGATGCGGTTCTTCATGTTGTCTGACCAGAGACCGCG 16483
Query 109686 CTTTTTGAGATCGTCAA-CAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTG 109743
| || || | | ||| ||| ||||||||| || || ||||| ||
Sbjct 16484 ATCGACAAGGTCCTTTAGCAACCATGG--GTTGACCACCTGGAACTCGCCAGCTAGAACA 16541
Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803
|| || ||| ||||| | ||||| || |||||||| |||||| ||| | ||| ||
Sbjct 16542 CGACGACTGTAAATGTTCGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGC 16601
Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT-CTT 109862
| ||| || ||||| |||||||| |||| || | ||| |||| || ||| ||
Sbjct 16602 GAAGTCGACGCTGTTGGCATGGGCGCCACCAGCAATGAGTTGCGGA----CTCCGTGCTG 16657
Query 109863 TACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAAT---TTAGTCTCACCATC 109919
| | || ||| ||| || |||| | | || | || || | |||| |
Sbjct 16658 TGCAATCTT-CGCCTTGAGTG--AATCCCA--GTCCCAGAGATCGGTTGGCGTCACGC-C 16711
Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGTACG 109978
|||||| || ||| ||| | |||| || | |||| || || | || |||| || |
Sbjct 16712 CCACATGTCGTATTGCAGTTC-CCCTTTGCTGACAGGGGAGCCAGCGTAAGTCTCATATG 16770
Query 109979 ACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAA 110038
|| ||| |||| ||| | || ||||| | || | ||||| || ||||| |
Sbjct 16771 GACCGAGTTGCTCCGCCAGTTCGCAGGAGGCCTCCAACGCTCCGTGATAAATGGTCTCGA 16830
Query 110039 AAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAA 110098
| || ||| || | | | | || | ||||||| || | | | | || |
Sbjct 16831 AGATCTGAATGTTTAGCCGTCTTGCTTCGGGAGAGTCGAACGGCATGCGAAGAGCAAGGA 16890
Query 110099 ACACATCCGCTAGACC-CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGT 110157
| |||| || || || |||| |||| | ||||| ||||| || | || || |
Sbjct 16891 AAGCATCGGCCAGGCCACTGA-CACCCAAGCCAATCGGGCGGTGGCGTAAATT---GC-T 16945
Query 110158 CGAGC-AGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213
| || || |||| ||||| ||| |||| ||||| | | || | || |||||
Sbjct 16946 CTTGCGAGCTTCTGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGT 17005
Query 110214 CACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGAC 110273
|| ||| || | |||||| ||||| | | ||| | | | | | || ||| ||
Sbjct 17006 AACCACCTTAGTAACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAATATCCAC 17065
Query 110274 ATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTA 110333
||| |||| | ||| | || ||||||||||| |||| ||| || | | |||||
Sbjct 17066 GTATGTGGGTAAAGCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTA 17125
Query 110334 TTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGA 110393
|||| ||| || || |||| ||||||| |||| ||| | ||| ||||| || ||
Sbjct 17126 CTCCATAATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGA 17185
Query 110394 TTTGGAG-TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452
||| | ||||| |||||||||||| |||| | || ||||| || ||||| || | ||
Sbjct 17186 TTTTCTGTTTGCA-GCATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCT 17244
Query 110453 TGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCC 110511
||| || || | ||||| || || || | ||||| || | | |||| ||
Sbjct 17245 CGAGGATTGCGTACCATAGTTTCTGC-GCACGCACAGTCTCGCGACCACGACCCTCGCGT 17303
Query 110512 TCGTACTTGGT-GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570
||||| ||| | ||| | |||| || | | || |||||||||| ||| || ||
Sbjct 17304 TCGTA-TTGTTCGTAGAGAGCCTCGAACTTTTCCCCATACACATCAGCAAG-GCCAGGGC 17361
Query 110571 CTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629
|| || ||||| | | | ||| | | || ||| |||| |||||||||| ||
Sbjct 17362 ATTCGTGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGT 17421
Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689
| || ||||| | ||| |||||||||| || ||| | ||||| | || |||||
Sbjct 17422 CTGGGATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCT 17481
Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749
||| || || | ||| | || |||| ||||| || || ||||||| || | ||
Sbjct 17482 TGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGG 17541
Query 110750 ATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806
|| ||| || | || | ||||| || || ||| ||| | || | |
Sbjct 17542 CACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAA 17601
Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866
||||||| | | ||| | || |||||||| || | ||| ||| | || |
Sbjct 17602 GCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGC 17661
Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTC 110924
||||| ||| | || | ||| |||||||| || ||| || | | ||| |
Sbjct 17662 GAATGCGGTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTT 17721
Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984
| |||||| ||||||| || || || || |||| || |||| | || || ||
Sbjct 17722 TCAGAGTGT--CATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGA 17779
Query 110985 AGACATCTGAGGACGA-GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACA 111043
|| || || || || || || || || |||| || || |||| |||||| ||| |
Sbjct 17780 AGCCAATTG-GGCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGA--A 17836
Query 111044 GACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAAT 111101
| |||| ||||| |||||| || |||| ||| | | |||| ||||| ||
Sbjct 17837 GTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTAT 17896
Query 111102 ACCAATGGCAACTCGCATGAACATATATTGAGG 111134
||| | ||||| ||||||| ||| | ||| ||
Sbjct 17897 ACCCACCGCAACACGCATGATCATGTGTTGCGG 17929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588963609417400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |