Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq451 86.0 7e-12 >seq451 Length=24497 Score = 86.0 bits (94), Expect = 7e-12 Identities = 218/326 (67%), Gaps = 12/326 (4%) Strand=Plus/Plus Query 169182 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 169241 |||||||| || || || || || | ||| ||| ||||| ||||| | | |||||||| Sbjct 18878 AGACCCTTTATATGTGACCCGTCGTGATCTTGATCGGTCATGATCATTATATGACCATAG 18937 Query 169242 CGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCCAAGATCTTCTTGA 169299 || || | || ||| ||||| ||||| ||||| |||| || ||||||| Sbjct 18938 CGTAGGGATCGAGTGTCAGTGTACTCTTT--CTTGTGCTGAAGGCCCATGAATTTCTTGA 18995 Query 169300 GATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTAC 169359 || | | ||| || || ||| ||| | | || || ||||| |||||| Sbjct 18996 TATTCTGAATCTCCTGATTCTTGCTGATCTGATCAATAGAGGCATCGCGAACATTCAGCA 19055 Query 169360 ACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGA 169419 || || || || |||||||||||| | ||||| | ||||||| | | || |||| Sbjct 19056 TTTTGCCGCGAAGTGGAAAGACGCCAAAAAGATCAGGATCAACGACTGCACGGCCTGCGA 19115 Query 169420 CCGCAAG--GGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACT--TTCCAGAT 169475 ||||| || | ||||||||||| ||||| | || || ||||| | | || | Sbjct 19116 GAGCAAGCAGGGAT--GCTGAATCACCTTCCGTTAAGATAAGTGTACATTTGTACCCG-- 19171 Query 169476 TGCGCCGTACCCGCCTTGTTTGCGTC 169501 | | ||||||||||| ||||| || Sbjct 19172 TCCTTGGTACCCGCCTTATTTGCATC 19197 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 170271 GAGTAGATGTTGGTCAACTTGGCACCATAGCCGTTGCGACCTCC---CACAATTCTCTTC 170327 ||||| |||||||| | ||||||||||||||| |||||||| || ||| || | || Sbjct 20018 GAGTAAATGTTGGTGAGCTTGGCACCATAGCCATTGCGACCGCCAGTCAC-TTTAGCCTC 20076 Query 170328 TTTGTGTCATCATAATTTGTACTCGTAAGAAGATGCCCAAATGTAAGTTCGGGATTCCAA 170387 | ||||||| ||||| | | ||| || ||||| || || | | ||||||| | | Sbjct 20077 AT--TGTCATCGTAATTGGAAGACGTGAGGAGATGTCCGAAAATCATTTCGGGAATGTAT 20134 Query 170388 ATACCCTCTTTTTCGTGCAT 170407 ||||||||||| || || || Sbjct 20135 ATACCCTCTTTGTCATGGAT 20154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968388278920