Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq990 136 9e-27 seq1047 96.9 8e-15 >seq990 Length=11377 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||| ||| |||||||| ||||| ||| ||||| | ||||||||| Sbjct 10310 ACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCG 10251 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || ||||| || |||||||| || ||||| ||||||||| Sbjct 10250 AGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTCTTGA 10191 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || |||||||| || || || || || | ||||| Sbjct 10190 ATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTG 10131 Query 195112 CCTGT 195116 || || Sbjct 10130 CCGGT 10126 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || || ||||| ||||| || | | |||||||||||||| || ||||| || |||||| Sbjct 10748 TCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAG 10689 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || |||| ||||||||| || ||||| || |||||||||||||| || ||| ||||| Sbjct 10688 ATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTG 10629 Query 195070 TCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 || || || || ||| ||| ||||| || || | ||||| || || | |||||| Sbjct 10628 TCTATCGTATC---ACTTGATTCGACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTA 10572 Query 195127 ACGAACACTTGCAT 195140 || || | |||||| Sbjct 10571 ACAAAGATTTGCAT 10558 Score = 116 bits (128), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || || ||||||||||| || | | || || || ||||| | ||||| || |||||| Sbjct 10976 TCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAG 10917 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | || || ||||||||||| ||||| || ||||||||||| || ||| ||||| Sbjct 10916 ATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTG 10857 Query 195070 TCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 ||||| || || ||| ||| ||||| ||||| | ||||| || || | |||||| Sbjct 10856 TCAATCGTATCGCTCGA---TTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTG 10800 Query 195127 ACGAACACTTGCAT 195140 ||||| | ||||| Sbjct 10799 ACGAAGATCTGCAT 10786 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||||||||| ||||| || | || || | ||||| || Sbjct 10538 ACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCA 10479 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || | || || ||||| ||||| || || ||||| ||||| Sbjct 10478 AGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGG 10419 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || ||||| || |||||||| || || || ||||| || | || || Sbjct 10418 ATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTG 10359 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 10358 CCGGTCAGTGTCTTGACAAAGATCTGCAT 10330 >seq1047 Length=44052 Score = 96.9 bits (106), Expect = 8e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||||||| ||| || |||||||| ||||||| || || | ||||| || Sbjct 5393 AACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGACCATCCTC 5452 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||||||| || || ||||| || || || ||||| || || || || ||||||||| Sbjct 5453 GAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCTTTGTCT 5510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109457675762861