Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq990 136 9e-27
seq1047 96.9 8e-15
>seq990
Length=11377
Score = 136 bits (150), Expect = 9e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| ||| ||| |||||||| ||||| ||| ||||| | |||||||||
Sbjct 10310 ACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCG 10251
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || ||||| || |||||||| || ||||| |||||||||
Sbjct 10250 AGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTCCTTGTCTTGA 10191
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || || |||||||| || || || || || | |||||
Sbjct 10190 ATCTTGCTCTTGACATTATCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTG 10131
Query 195112 CCTGT 195116
|| ||
Sbjct 10130 CCGGT 10126
Score = 131 bits (144), Expect = 4e-25
Identities = 146/194 (75%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009
|| || ||||| ||||| || | | |||||||||||||| || ||||| || ||||||
Sbjct 10748 TCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAG 10689
Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069
|| |||| ||||||||| || ||||| || |||||||||||||| || ||| |||||
Sbjct 10688 ATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTG 10629
Query 195070 TCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126
|| || || || ||| ||| ||||| || || | ||||| || || | ||||||
Sbjct 10628 TCTATCGTATC---ACTTGATTCGACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTA 10572
Query 195127 ACGAACACTTGCAT 195140
|| || | ||||||
Sbjct 10571 ACAAAGATTTGCAT 10558
Score = 116 bits (128), Expect = 8e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009
|| || ||||||||||| || | | || || || ||||| | ||||| || ||||||
Sbjct 10976 TCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAG 10917
Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069
|| | || || ||||||||||| ||||| || ||||||||||| || ||| |||||
Sbjct 10916 ATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTG 10857
Query 195070 TCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126
||||| || || ||| ||| ||||| ||||| | ||||| || || | ||||||
Sbjct 10856 TCAATCGTATCGCTCGA---TTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTG 10800
Query 195127 ACGAACACTTGCAT 195140
||||| | |||||
Sbjct 10799 ACGAAGATCTGCAT 10786
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || ||||||||||| ||||| || | || || | ||||| ||
Sbjct 10538 ACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCA 10479
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || ||||| || | || || ||||| ||||| || || ||||| |||||
Sbjct 10478 AGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGG 10419
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| || ||||| || |||||||| || || || ||||| || | || ||
Sbjct 10418 ATTTTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTG 10359
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || || || | |||||
Sbjct 10358 CCGGTCAGTGTCTTGACAAAGATCTGCAT 10330
>seq1047
Length=44052
Score = 96.9 bits (106), Expect = 8e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || ||||||||| ||| || |||||||| ||||||| || || | ||||| ||
Sbjct 5393 AACCAGATGAAGAGTGCTCTCCTTCTGAATATTATAATCGGAGAGGGTGCGACCATCCTC 5452
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
||||||||| || || ||||| || || || ||||| || || || || |||||||||
Sbjct 5453 GAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCTTTGTCT 5510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109457675762861
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |