Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq990 127 1e-24
>seq990
Length=11377
Score = 127 bits (140), Expect = 1e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||| ||||||||||| ||||| || | ||| |||| |||
Sbjct 10766 ACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCC 10707
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || ||||| || ||||||| ||| ||||| |||| | ||||| ||||| |
Sbjct 10706 AGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGA 10647
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| || ||| |||||| |||| | || || || | || ||||| ||
Sbjct 10646 ATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGATGGTCTTG 10587
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| |||||||| || |||||||| ||||||
Sbjct 10586 CCGGTGAGAGTTTTAACAAAGATTTGCATA 10557
Score = 96.9 bits (106), Expect = 2e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
|| |||||||| |||||||| ||||| || ||| | || |||| || |||||||| ||
Sbjct 10526 GTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCA 10467
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
|| || || | || |||||||| | || | ||||| || || || ||| |||
Sbjct 10466 GCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTC 10407
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
||| | || | || | |||||| || | || |||||||| || || || |||
Sbjct 10406 ACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTC 10347
Query 34965 TTCACAAAGATCTGCATA 34982
|| |||||||||||||||
Sbjct 10346 TTGACAAAGATCTGCATA 10329
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | |||||||| |||||||| || ||||| || | | | | || |||
Sbjct 10994 ACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCC 10935
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || || || || || |||| || ||||||||| | || | ||||||||||| |
Sbjct 10934 AATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGA 10875
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| || ||| | |||| || | | || || || | ||| ||||| ||
Sbjct 10874 ATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGACTTCTAGGGTGATGGTCTTG 10815
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| |||||||| || || ||||||||||||
Sbjct 10814 CCGGTGAGAGTTTTGACGAAGATCTGCATA 10785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324626941257624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |