Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq990 127 1e-24 >seq990 Length=11377 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||| ||||||||||| ||||| || | ||| |||| ||| Sbjct 10766 ACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCTCCCATCTTCC 10707 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || ||||||| ||| ||||| |||| | ||||| ||||| | Sbjct 10706 AGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTCTTTGTCTTGA 10647 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| |||||| |||| | || || || | || ||||| || Sbjct 10646 ATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAGAGTGATGGTCTTG 10587 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||| || |||||||| |||||| Sbjct 10586 CCGGTGAGAGTTTTAACAAAGATTTGCATA 10557 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 || |||||||| |||||||| ||||| || ||| | || |||| || |||||||| || Sbjct 10526 GTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGTTTGCCA 10467 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || | || |||||||| | || | ||||| || || || ||| ||| Sbjct 10466 GCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTCGATTTC 10407 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | || | |||||| || | || |||||||| || || || ||| Sbjct 10406 ACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCGGTCAGTGTC 10347 Query 34965 TTCACAAAGATCTGCATA 34982 || ||||||||||||||| Sbjct 10346 TTGACAAAGATCTGCATA 10329 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | |||||||| |||||||| || ||||| || | | | | || ||| Sbjct 10994 ACCAAATGCAGGGTGCTTTCCTTCTGAATATTGTAGTCTGACAACGTCCTACCGTCTTCC 10935 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || || || |||| || ||||||||| | || | ||||||||||| | Sbjct 10934 AATTGCTTGCCCGCGAAGATTAATCTCTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGA 10875 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | |||| || | | || || || | ||| ||||| || Sbjct 10874 ATCTTCGACTTCACGTTGTCAATCGTATCGCTCGATTCGACTTCTAGGGTGATGGTCTTG 10815 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||| || || |||||||||||| Sbjct 10814 CCGGTGAGAGTTTTGACGAAGATCTGCATA 10785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626941257624