Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 116 4e-21
>seq1295
Length=44835
Score = 116 bits (128), Expect = 4e-21
Identities = 455/704 (65%), Gaps = 20/704 (3%)
Strand=Plus/Plus
Query 48103 GTTCGTATT--TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGG 48160
||||||||| | ||| | | | ||| || | ||||||||||||| | | | |||||
Sbjct 17302 GTTCGTATTGTTCGTAGAGAGC--CTCGAACTTTTCCCCATACACATCAGCAAGGCCAGG 17359
Query 48161 ACATTCATTAGGACACATCAATGACCA-ATCCTCATCATTTTTTACTCTAGTCATAAATA 48219
||||| | ||||||||||| | ||| | || || | | || | |||| || |
Sbjct 17360 GCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTC-TGCTCCACCCGTTTCATGAACA 17418
Query 48220 TATCTGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278
||||| |||||||| || || ||| | || | || | | |||||| ||||||
Sbjct 17419 AGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCCATGG 17477
Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338
||| | || || || ||| | ||| || |||||||| || || | ||| || ||
Sbjct 17478 TTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCA 17537
Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398
| |||| || || || || || |||||||| | ||| | ||||| ||||| || ||
Sbjct 17538 AAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACA 17597
Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458
| | ||| || || | || ||||| | ||||| || || |||||| || |
Sbjct 17598 CGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTT 17657
Query 48459 GCTCTTAT----ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514
|| | || ||| |||| | |||||||||||| || | || || || | ||
Sbjct 17658 GCGCGAATGCGGTGTAC--ATTG--AGACCTATACCACCAGCATTCTTTGAGATCATGGC 17713
Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574
|| ||| || || |||||||| || || ||||| || || |||| | | | ||
Sbjct 17714 GCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAA 17773
Query 48575 ACAACTAGACATTT--GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632
||| || || || ||||||| || || | | || | ||||| || ||||||
Sbjct 17774 ACATGAAGCCAATTGGGCGGATG--GTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGA 17831
Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGA 48692
| || | || | || | | || || || || || ||| || || ||
Sbjct 17832 GTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCG 17891
Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752
|||||||| | | |||||||| | ||| | ||| ||||| || ||||||| |
Sbjct 17892 TGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCGTCA 17951
Query 48753 ATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796
||| ||| |||||||| ||| | || || || ||||||||
Sbjct 17952 ATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562096974636120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |