Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1295 116 4e-21 >seq1295 Length=44835 Score = 116 bits (128), Expect = 4e-21 Identities = 455/704 (65%), Gaps = 20/704 (3%) Strand=Plus/Plus Query 48103 GTTCGTATT--TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGG 48160 ||||||||| | ||| | | | ||| || | ||||||||||||| | | | ||||| Sbjct 17302 GTTCGTATTGTTCGTAGAGAGC--CTCGAACTTTTCCCCATACACATCAGCAAGGCCAGG 17359 Query 48161 ACATTCATTAGGACACATCAATGACCA-ATCCTCATCATTTTTTACTCTAGTCATAAATA 48219 ||||| | ||||||||||| | ||| | || || | | || | |||| || | Sbjct 17360 GCATTCGTGCGGACACATCAAAGTCCATGTGCTGTTC-TGCTCCACCCGTTTCATGAACA 17418 Query 48220 TATCTGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 ||||| |||||||| || || ||| | || | || | | |||||| |||||| Sbjct 17419 AGTCTGGGATCCAAAGCGCGTAGAAA-AGGTCGCGAGCACGGACTTCTTCTTTGCCATGG 17477 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 ||| | || || || ||| | ||| || |||||||| || || | ||| || || Sbjct 17478 TTCTTGCGCAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCA 17537 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | |||| || || || || || |||||||| | ||| | ||||| ||||| || || Sbjct 17538 AAGGCACCGGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACA 17597 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 | | ||| || || | || ||||| | ||||| || || |||||| || | Sbjct 17598 CGAAGCATAGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTT 17657 Query 48459 GCTCTTAT----ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 || | || ||| |||| | |||||||||||| || | || || || | || Sbjct 17658 GCGCGAATGCGGTGTAC--ATTG--AGACCTATACCACCAGCATTCTTTGAGATCATGGC 17713 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 || ||| || || |||||||| || || ||||| || || |||| | | | || Sbjct 17714 GCATGTTTTCAGAGTGTCATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAA 17773 Query 48575 ACAACTAGACATTT--GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 ||| || || || ||||||| || || | | || | ||||| || |||||| Sbjct 17774 ACATGAAGCCAATTGGGCGGATG--GTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGA 17831 Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGA 48692 | || | || | || | | || || || || || ||| || || || Sbjct 17832 GTGAAGTACTTGTTCGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCG 17891 Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752 |||||||| | | |||||||| | ||| | ||| ||||| || ||||||| | Sbjct 17892 TGTATACCCACCGCAACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCGTCA 17951 Query 48753 ATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 ||| ||| |||||||| ||| | || || || |||||||| Sbjct 17952 ATTCTCAGGAGATATGAGCGTTCAAGAGTCTTGAAGCCAAAATA 17995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096974636120