Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq32 125 6e-23 seq990 113 4e-19 >seq32 Length=30463 Score = 125 bits (138), Expect = 6e-23 Identities = 371/567 (65%), Gaps = 15/567 (3%) Strand=Plus/Minus Query 552042 GATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGAT 552101 |||||||| || ||||| || ||||| |||| || | | || | ||||| || Sbjct 5612 GATCTCTTCCGATCCACAATGGAGCCAGTCGAACGTGTCCTCCGTGACGCCAAGATCGAC 5553 Query 552102 AAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 || ||| || || ||||| || || || ||||| || || | ||||| || |||| Sbjct 5552 AAGTCCTCCGTGCACGAAATCGTACTGGTCGGTGGTTCAACCCGTATTCCGAAGATTCAG 5493 Query 552162 GAAATGTTA----AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCA 552215 | ||| || | ||||| |||||| || | || |||| | |||||| Sbjct 5492 AAGATGGTATCCGACTTCTT----CAATGGCAAGGAGCCCAAC--AAGTCCATCAATCCA 5439 Query 552216 GATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC-TGA 552274 || |||||||||||||| || || || |||| || ||||| |||||||| | || | Sbjct 5438 GACGAGGCTGTTGCCTACGGCGCAGCTGTTCAGGCCGCTATCCTTTCTGGTGACACCTCG 5379 Query 552275 TGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAA 552332 | || | || || | || | || | |||||||| || | ||| | ||| | || Sbjct 5378 AGCAAGTCAACCAATGAGATCCTGCTCCTCGATGTTACGCCATTGTCTGTCGGTATTGAG 5319 Query 552333 ACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAA 552392 || | ||| ||| | ||||| || ||| | | || || ||||| || || ||| Sbjct 5318 ACGGCTGGCGGTGTGATGACCCCGCTGATCAAGCGCAACACCACTATCCCGACGAAGAAA 5259 Query 552393 TCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAA 552452 ||| || || || || | || || || ||| | | ||| || ||| | | ||| Sbjct 5258 TCTGAGGTGTTCTCCACATTCTCCGACAACCAACCGGGTGTGCTCATCCAAGTCTATGAG 5199 Query 552453 GGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATT 552512 || || | ||| ||||| || ||| || || | ||| | | || || Sbjct 5198 GGTGAGCGTGCTCGCACCAAAGACAACAATTTGCTCGGCAAATTTGAGCTCACTGGCATC 5139 Query 552513 CCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGA 552572 || |||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 5138 CCACCTGCTCCGCGTGGTGTACCTCAGATTGAGGTTACCTTCGACATGGATGCCAATGGT 5079 Query 552573 ATTTTGAATGTGACTGCTTGTGATAAA 552599 || |||| || ||||| ||| ||| Sbjct 5078 ATCATGAACGTCTCTGCTGTTGAGAAA 5052 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| || |||||||| || ||||| ||| | ||||| || ||||||| Sbjct 6167 ATGCTGTCATCACTGTGCCGGCATATTTCAACGACTCTCAAAGACAAGCAACCAAAGATG 6108 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | || || || | ||||| | ||||||||||| || || || || || || Sbjct 6107 CTGGTCTCATCGCCGGCTTGAATGTGTTGCGTATTATCAACGAGCCGACCGCCGCAGCCA 6048 Query 550518 TTGCATATGGACTTGATAA 550536 |||| || || || || || Sbjct 6047 TTGCCTACGGCCTCGACAA 6029 >seq990 Length=11377 Score = 113 bits (124), Expect = 4e-19 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || | || | |||||||| || ||| ||||| || | | ||||| Sbjct 10776 GAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGTTCT 10717 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| ||||| || ||||| || || |||||||| || ||||| ||||| || || Sbjct 10716 CCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACCCTC 10657 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||| |||||||| || || || || || |||||| | ||| | | ||| |||| Sbjct 10656 TTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACT-TGATTCGACTTCTAGAG 10598 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | || || || || ||||||||||| || ||||||||| Sbjct 10597 TGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCATA 10557 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || ||||| || |||||||||||||| ||| ||||| |||| || || | Sbjct 10548 GAGACGCAGGACAAGGTGGAGGGTACTTTCTTTTTGAATGTTGTAGTCAGAGAGGGTGCG 10489 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| ||||| || || ||||| | | ||||| || ||||| || || || Sbjct 10488 GCCATCCTCAAGCTGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTC 10429 Query 563376 TTTATCTTGAATTTT 563390 ||||||||| ||||| Sbjct 10428 TTTATCTTGGATTTT 10414 Score = 93.3 bits (102), Expect = 3e-13 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 || || |||||||||||||| || || || || ||| ||||| || ||| ||||| | Sbjct 10319 AGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTC-GCTCAGAGTGCG 10261 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| ||||| || ||||| || || || | ||||||||| ||||| || ||||| Sbjct 10260 GCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATACCTTC 10201 Query 563376 TTTATCTTGAATTTT 563390 || |||||||| || Sbjct 10200 CTTGTCTTGAATCTT 10186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029206995369670