Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq959 298 1e-75 seq1295 174 3e-38 >seq959 Length=28360 Score = 298 bits (330), Expect = 1e-75 Identities = 513/734 (70%), Gaps = 13/734 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| ||||||||||| || ||||| ||| |||||||||||||||| Sbjct 16466 CTGATAATCACCGACTCTCTTCTCAAAGAAATTGGTCTTGCCCGCCAACGAGATGTTCTC 16407 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATAC-ACCCG-TGTCAGGCCCATCTGTTCCAGC 47956 ||||||| || ||||||| | ||| || ||| | ||| ||| | | ||| Sbjct 16406 CATGAAGTCAAATGGGTTGGTGGCGTTGTAATACCTGCTGTT--GCCGAGCGCGAGCAGT 16349 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| |||| || || |||||||||||| |||||||| || ||||||||||| || Sbjct 16348 AGGCGATCGGCCACAAACTCGATGTATTGGCACATGAGGTTGGAGTTCATGCCTAGTAGT 16289 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | || ||||| | | ||| | |||||||| || || |||||||| | || Sbjct 16288 GCGACAGGCAATGAGTCTGTCACGAACTCCTTTTCAATGGTGACGGCTTCAGTGATGATG 16229 Query 48077 TGCTTAACGCGGGACTCTGA--GGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | || | | | | || ||| |||||||| ||||| || | |||||| |||| Sbjct 16228 CTCCTCAC-CAGCTCCC-GATCGGGCTTGTTGCGAAGGTG---GGAAAAGAGCAGACAGG 16174 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| ||| || || ||| || ||| ||||||| ||| ||||| | Sbjct 16173 CGAAGTCTGTGTGCATGCCCTCATCACGGGAAATAAGCTCGTTGGAAAAGGTCAGACCGG 16114 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||||||| | ||||| |||| ||||||||| |||| Sbjct 16113 GCATGAGACCACGCTTTTTGAGCCAGAAAATGGATGCGAAGGAGCTAGAGAAGAAAATGC 16054 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || ||| | ||||| | | ||||| || |||| Sbjct 16053 CCTCTACAGCGGCGAAAGCAACGAGACGACAGCCGAACGTCGAATTCTTATCGCTAATCC 15994 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | |||||||| || |||||||| ||||||||| || | || ||||| ||| | Sbjct 15993 ATCGCAGCGCCCAATCCGCCTTCTTACCGATGCATGGGATGTTGTCGATGGCGTTGAATA 15934 Query 48375 GCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | | ||| | | || ||| | ||||| || ||| | ||| ||||| Sbjct 15933 GATACGTGC-GTTGTTTCGGTTCGCTGATGTAGGTGTCGATGAGCAGAGAGTAAGTCTCA 15875 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | |||||| || ||||||||| ||||||||| | || || | ||| Sbjct 15874 GAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGTGCTTCGGGTATTTGC 15815 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||||||| ||| | || ||||| ||||| ||||| ||||| || ||||| Sbjct 15814 ACCTCGGCTGAGAATCGCTCGACGAGGTTCTCGTTGACAATCCCGTCTGATGCCGCAAAA 15755 Query 48554 AAGGCAAGGACATG 48567 ||||| |||||||| Sbjct 15754 AAGGCGAGGACATG 15741 >seq1295 Length=44835 Score = 174 bits (192), Expect = 3e-38 Identities = 915/1433 (64%), Gaps = 51/1433 (4%) Strand=Plus/Plus Query 212712 TGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCC 212771 ||||| ||||||| | | | |||||| ||||| | | |||| | ||| || ||| Sbjct 16314 TGGTCGATGAATGCGCCGCGGTCAGCAGCCATCTGCACAATATGACGCTGACTGATTTCC 16373 Query 212772 CACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGAC 212831 || || |||||| | | |||||||||| ||||| | | |||||| ||| |||||| Sbjct 16374 CATACAGTCTTGTAAAGGGCTTTGAGGTCATCTGGAATGTTCGGGATGCGCTGAACAGAC 16433 Query 212832 CCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCC 212888 || | | | ||| | | | | ||||| || |||||| || | | || | Sbjct 16434 CCGCCATCTGCAATGATGCGGTTCTT---CATGTTGTCTGACCAGAGACCGC-GATCGAC 16489 Query 212889 A-GGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTG 212947 | || ||| | || |||||||| | |||||| || || | || || | | Sbjct 16490 AAGGTCCTTTAGCAACCATGGGTTGACCACCTGGAACTCGCCAGCTAGAACACGACGACT 16549 Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||||| ||| |||||||| ||||||| | || ||| |||| ||||| | ||| Sbjct 16550 GTAAATGTTCGAAGTGTACGGCTCGAAACATTCATTGAAGCCCATGATCTGCGAAGTCGA 16609 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 ||||| |||||||| |||||||| | ||| | |||||||||| | || || Sbjct 16610 CGCTGTTGGCATGGGCGCCACCAGCAATGAGTTGCGGACTCCGTGCTGTGCAATCTT-CG 16668 Query 213068 CCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 || || |||||||||| ||| ||| |||| ||| |||||||| Sbjct 16669 CCTTGAGTGAATCCCAGTCCCAG-----AGATCGGTTGGCGTC----ACGCCCCACATGT 16719 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | | |||| |||||||| || ||| ||| ||||| || || || | | Sbjct 16720 CGTATTGCAGTTCCCCTTTGCTGACAGGGGAGCCAGCGTAAGTCTCATATGGACCGAGTT 16779 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 || ||||| |||||||| |||| || || ||| || ||||| || || |||| Sbjct 16780 GCTCCGCCAGTTCGCAGGAGGCCTCCAACGCTCCGTGATAAATGGTCTCGAAGATCTGAA 16839 Query 213247 TGTTGAGCT-TCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 |||| ||| ||||| | || || || ||| ||||| | |||| |||| Sbjct 16840 TGTTTAGCCGTCTTG-CTTCGGGAGAGTCGAACGGCATGCGAAGAGCAAGGAAAGCATCG 16898 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTC 213364 ||||| || ||| || | ||| || || | ||| | | || |||| |||| || Sbjct 16899 GCCAGGCCACTGACACCCAAGCCAATCGGGCGGTGGCGTAAATTGCTCTTGCGAGCT-TC 16957 Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424 || ||| ||| |||| ||||| |||||||| | ||| || |||| || || Sbjct 16958 TGGCACGGGATAATGGTTGATATCGATAATCTTGTTCAAGTTTTTCGTAACCACCTTAGT 17017 Query 213425 GACATGGGCCAGGTACTCGTGATTG-AACACGTAGCCCCCGTCCTGCACAAACTCAGGCA 213483 || | || | || | |||| ||| | | | | | ||| | || | Sbjct 17018 AACTTCATGAAGTTTCTTGAAATTGTAACTCTCATTTTCAATA-TCCACGTATGTGGGTA 17076 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 || | | || || ||||| || || ||||| | || | | ||||||||||| |||| Sbjct 17077 AAGCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCT 17136 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 | |||||||||||| | || ||||| || ||||| | ||||| || ||| ||| | Sbjct 17137 CAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTG 17196 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 ||| |||||| ||| |||| |||| | || ||||| || | | | || || | Sbjct 17197 CAGCATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGT 17256 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCT--CCGGGCGTAGCCTCGTACTG 213721 ||| || | | || | | || | | ||| | || |||| ||||| || Sbjct 17257 ACCATAGTTTC-TGCGCACGCACAGTCTCGCGACCACGACCCTCGCGT----TCGTATTG 17311 Query 213722 TTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGCG 213779 ||||||||| | | ||| | | ||||| || | ||| | || |||| || || Sbjct 17312 TTCGTAGAGAGCCTCGAACTTTT--CCCCATACACAT--CAG-CAAGGCCAGGGCATTCG 17366 Query 213780 ---GGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGG 213835 |||||||| | |||| || | || ||| || | | |||||||| ||| || Sbjct 17367 TGCGGACACATCAAAGTCCATGTGCTGTTCTGCTCC-ACCCGTTTCATGAACAAGTCTGG 17425 Query 213836 GACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCG 213895 || ||| |||||| ||| ||||| | | | || || ||| ||| ||||| Sbjct 17426 GATCCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCG 17485 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 ||| || || ||| || |||||||| ||||||||||| | |||||||||||||| || Sbjct 17486 CAGGTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACC 17545 Query 213956 CG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGAC 214012 | || | ||||| || || || || || || ||||| | | || || | Sbjct 17546 GGGACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCAT 17605 Query 214013 GGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA- 214071 ||||||| ||||| || ||| || || || | |||||||| || | || | | Sbjct 17606 AGGTACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGCGAAT 17665 Query 214072 -GGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 | || ||| |||| ||||| ||||| || | ||| |||||||||||||| Sbjct 17666 GCGGTGTACATTGAGA--CCTATACCACCAGCATTCTTTGAGATCATGGCGCA 17716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513202878720