Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq959 172 1e-37 seq1295 170 4e-37 >seq959 Length=28360 Score = 172 bits (190), Expect = 1e-37 Identities = 553/856 (65%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||||||||| || ||| |||||| ||||| ||||| ||||| Sbjct 15621 ATATGGCAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATCTT 15680 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTA- 25595 | || || || | | |||| || | || || || ||| ||| ||| | Sbjct 15681 TCAAAAGATTTGCATGACTGGAACAAGCGCCTGAATGATGACGAGCGTTTCTTCATCTCT 15740 Query 25596 CGTGT--TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | ||| | || || ||||| || || || || || || |||||||| || |||| || Sbjct 15741 CATGTCCTCGCCTTTTTTGCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGAGCGA 15800 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAG-TGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | || ||||| ||| | || || | || |||||||| |||||||| | Sbjct 15801 TTCTCAGCCGAGGTGCAAATACCCGAAG--CACGCTGCTTCTACGGCTTCCAGATCATGA 15858 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 | || ||| | ||||||||| || | ||| | || ||||| | || Sbjct 15859 TGGAGAATATCCACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGAA---- 15914 Query 25772 CCGAGAGA--GATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 |||| | | | || || || |||||||| |||| || ||||| | |||| Sbjct 15915 CCGAAACAACGCACGTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAG 15974 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 ||| ||||| || ||||| | | ||| | ||||| ||| || || || Sbjct 15975 GCGGATTGGGCGCTGCGATGGATTAGCGATAAGAATTCGACGTTCGGCTGTCGTCTCGTT 16034 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || || || ||||| |||||||| || ||| | || || || |||| ||||||||| Sbjct 16035 GCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTC 16094 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || || ||||||||| ||| ||||||||||||||| || | | || ||| Sbjct 16095 AAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAG 16154 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 || | |||| ||| || ||||| ||||||| | |||| | | | |||| || | Sbjct 16155 GGCATGCACACAGACTTCGCCTGTCTGCTCTTTTC---CCACCTTCGCAACAAGCCCGAT 16211 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 | ||| || || ||||||| || || || || || |||||||| Sbjct 16212 CGGGAGCTGGTGAGGAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTCGTGACA 16271 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| || |||||| |||||||||| ||| Sbjct 16272 GACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATACATCGAG 16331 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTA 26245 | ||||||||| | || ||| | ||| || | ||| |||| |||| | | Sbjct 16332 TTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTATTACA--ACGCCACCA 16389 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| || ||||| ||||| ||||| ||||||| || |||||||| |||||||| |||| Sbjct 16390 ACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAGAAGA 16449 Query 26306 GGGTCGGCGACTATCA 26321 | ||||| || ||||| Sbjct 16450 GAGTCGGTGATTATCA 16465 >seq1295 Length=44835 Score = 170 bits (188), Expect = 4e-37 Identities = 470/705 (67%), Gaps = 23/705 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || || || || || || ||||| || | || |||| || ||||| || || ||| Sbjct 17088 GCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCATAATCTCAGTGCACAGG 17147 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| | ||||| || |||| || || || || || | || ||||| ||||| Sbjct 17148 TTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTCTGTTTGCAGCATCCTTA 17207 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 ||| ||| |||||| || |||||| |||||| | || || || ||| |||| | Sbjct 17208 TAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGGATTGCGTACCATAGTT-T 17266 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGG--TCTTTTCATACCCGGTATAGAG 221949 ||| || | ||| ||| || ||| | ||||||| || | | | | ||| |||| Sbjct 17267 CTGCGCACGCACAGTC-TCGCGACCACGACCCTCGCGTTCGTATTGTTC---GTAGAGAG 17322 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | | |||||||| || ||| | || | ||||| || || | |||||||||| Sbjct 17323 CCT--CGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTGCGGACACATCAA 17380 Query 222010 ACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||| ||||| ||| | | |||| | |||||| | ||| |||||||| ||||| | Sbjct 17381 AGTCCATGTGCT-GTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGATCCAAAGCGCGT 17439 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || || || | | || || || ||| | ||| || | ||| || | || Sbjct 17440 AGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAGGTCGAGGAAGG 17499 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 || ||||| || ||||||||||| ||||||| ||| | || ||||| |||||||||| Sbjct 17500 AGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGC 17559 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 |||| ||||| | ||| | ||| | |||| | | ||||| | ||||||| |||| Sbjct 17560 CACCTTGATCGA-CATACCGCGCAGTGTTGTTGTATACACGAAGCATAGGTACCAATCCG 17618 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGT-TACTGGC 222303 || || || || ||||| ||| |||| || || | | ||| ||| Sbjct 17619 TTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGCGGTGTACATTG 17678 Query 222304 AGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 ||| || |||||||| || | || |||||||||||||| | || |||||||| Sbjct 17679 AGA----CCTATACCACCAGCATTCTTTGAGATCATGGCGCATGTTTTCAGAGTGTCATA 17734 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGA 222408 |||||||| ||| ||||||||| | || | || ||||| || Sbjct 17735 AATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGA 17779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825259427520