Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1399 107 1e-17 seq990 104 2e-16 >seq1399 Length=32242 Score = 107 bits (118), Expect = 1e-17 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 474653 TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTC 474711 ||| | || ||| || ||||||||||| |||| | ||| ||||| || || ||| | Sbjct 11576 TTTACGCCCGAAGAAGTTTCTTCAATGATTTTGGGCAAGATGAAGGAAGTTGCAGAG-GC 11518 Query 474712 ATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 |||||| || | |||| || || |||| || |||| ||||| |||||||| || || Sbjct 11517 ATATCTAGG-CGAGAAGGTCACAAATGCCGTCGTTACCGTTCCGGCATATTTCAACGACG 11459 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 | |||||| || || || ||||| || | ||||| || ||||| || |||| || Sbjct 11458 CACAACGTGCTGCGACAAAGGATGCAGGTACTATTGCTGGGCTTAACGTGCTACGAATCG 11399 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 | || ||||| ||||| |||||||| || || || | || |||| Sbjct 11398 TCAACGAACCGACAGCTGCCGCACTAGCATACGGATTGGACAAGA 11354 >seq990 Length=11377 Score = 104 bits (114), Expect = 2e-16 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| || || |||||||||||||| || || || || || || || || ||| |||| Sbjct 10323 ACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTC-GCTCAGAG 10265 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | |||||| |||||||| || || || || || ||||| ||||| ||||| || | Sbjct 10264 TGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATAC 10205 Query 480670 CTTCCTTGTCTTGAATCTT 480688 ||||||||||||||||||| Sbjct 10204 CTTCCTTGTCTTGAATCTT 10186 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | || | ||||||||| || || || || || | | || Sbjct 10779 ACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGT 10720 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| |||||| |||||||| || || || || || | |||||| ||||| ||||| || Sbjct 10719 TCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACC 10660 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 || |||||||||||||| || || || || |||||| | | ||| || Sbjct 10659 CTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAG 10600 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||||||||| ||||| || ||||| Sbjct 10599 AGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTG 10561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268107007964084