Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1399 107 1e-17
seq990 104 2e-16
>seq1399
Length=32242
Score = 107 bits (118), Expect = 1e-17
Identities = 162/225 (72%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 474653 TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTC 474711
||| | || ||| || ||||||||||| |||| | ||| ||||| || || ||| |
Sbjct 11576 TTTACGCCCGAAGAAGTTTCTTCAATGATTTTGGGCAAGATGAAGGAAGTTGCAGAG-GC 11518
Query 474712 ATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770
|||||| || | |||| || || |||| || |||| ||||| |||||||| || ||
Sbjct 11517 ATATCTAGG-CGAGAAGGTCACAAATGCCGTCGTTACCGTTCCGGCATATTTCAACGACG 11459
Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830
| |||||| || || || ||||| || | ||||| || ||||| || |||| ||
Sbjct 11458 CACAACGTGCTGCGACAAAGGATGCAGGTACTATTGCTGGGCTTAACGTGCTACGAATCG 11399
Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
| || ||||| ||||| |||||||| || || || | || ||||
Sbjct 11398 TCAACGAACCGACAGCTGCCGCACTAGCATACGGATTGGACAAGA 11354
>seq990
Length=11377
Score = 104 bits (114), Expect = 2e-16
Identities = 108/139 (78%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||| || || |||||||||||||| || || || || || || || || ||| ||||
Sbjct 10323 ACGCAGGCGCAGTACAAGATGAAGCGTGCTCTCCTTTTGAATGTTGTAGTC-GCTCAGAG 10265
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | | |||||| |||||||| || || || || || ||||| ||||| ||||| || |
Sbjct 10264 TGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCTGGAGGGATAC 10205
Query 480670 CTTCCTTGTCTTGAATCTT 480688
|||||||||||||||||||
Sbjct 10204 CTTCCTTGTCTTGAATCTT 10186
Score = 98.7 bits (108), Expect = 6e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | || | ||||||||| || || || || || | | ||
Sbjct 10779 ACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCTGACAACGT 10720
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
||| |||||| |||||||| || || || || || | |||||| ||||| ||||| ||
Sbjct 10719 TCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGCGGAATACC 10660
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|| |||||||||||||| || || || || |||||| | | ||| ||
Sbjct 10659 CTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCGACTTCTAG 10600
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||||||||| ||||| || |||||
Sbjct 10599 AGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTG 10561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268107007964084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |