Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq990 105 1e-17 >seq990 Length=11377 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || ||||| || | | |||| |||||||| || || || || |||||||| Sbjct 10968 AATATTGTAGTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCT 10909 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || ||||| || || || ||||| || || || || || || || Sbjct 10908 CTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGT 10849 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| |||||| |||||||| || ||||| || || || | ||||| | ||| ||||| Sbjct 10848 ATCGCTCGATTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTG 10789 Query 172067 CAT 172069 ||| Sbjct 10788 CAT 10786 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || ||||| ||| || || ||| || || ||| Sbjct 10787 ATACCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCT 10728 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||| ||| || || || || |||| ||| ||||||||||| Sbjct 10727 GACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGC 10668 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || || || || ||| ||||| ||||| Sbjct 10667 GGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCG 10608 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| ||||| || || || | ||||||| || || ||||| Sbjct 10607 ACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||| ||||| || | ||| ||||| || || || || ||||||||||| ||| Sbjct 10475 TGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATT 10416 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| || || || || || ||||| || || || || || |||||||| || Sbjct 10415 TTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCG 10356 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || | || |||||||| Sbjct 10355 GTCAGTGTCTTGACAAAGATCTGCAT 10330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905116958201400