Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq990 105 1e-17
>seq990
Length=11377
Score = 105 bits (116), Expect = 1e-17
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||| || ||||| || | | |||| |||||||| || || || || ||||||||
Sbjct 10968 AATATTGTAGTCTGACAACGTCCTACCGTCTTCCAATTGCTTGCCCGCGAAGATTAATCT 10909
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| ||||| || ||||| || || || ||||| || || || || || || ||
Sbjct 10908 CTGCTGGTCTGGAGGTATGCCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCAATCGT 10849
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| |||||| |||||||| || ||||| || || || | ||||| | ||| |||||
Sbjct 10848 ATCGCTCGATTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACGAAGATCTG 10789
Query 172067 CAT 172069
|||
Sbjct 10788 CAT 10786
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || | || || ||||| ||| || || ||| || || |||
Sbjct 10787 ATACCACCACGGAGACGCAGGACCAAGTGTAATGTACTTTCCTTCTGAATGTTGTAGTCT 10728
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | || | || |||| ||| || || || || |||| ||| |||||||||||
Sbjct 10727 GACAACGTTCTCCCATCTTCCAGTTGCTTGCCGGCGAAGATTAGTCTTTGTTGGTCAGGC 10668
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || ||||| ||||| || || || || || ||| ||||| |||||
Sbjct 10667 GGAATACCCTCTTTGTCTTGAATCTTCGACTTCACGTTGTCTATCGTATCACTTGATTCG 10608
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||||||| ||||| || || || | ||||||| || || |||||
Sbjct 10607 ACTTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTAACAAAGATTTGCAT 10558
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
||||| ||||| ||||| || | ||| ||||| || || || || ||||||||||| |||
Sbjct 10475 TGTTTGCCAGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATT 10416
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
|| ||| || || || || || ||||| || || || || || |||||||| ||
Sbjct 10415 TTCGATTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGTGTGATGGTTTTGCCG 10356
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | ||| || | || ||||||||
Sbjct 10355 GTCAGTGTCTTGACAAAGATCTGCAT 10330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905116958201400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |