Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq959 122 3e-22 seq1177 104 7e-17 >seq959 Length=28360 Score = 122 bits (134), Expect = 3e-22 Identities = 251/368 (68%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 || || ||| | ||||||| || ||| || || | ||||| |||||| |||||| Sbjct 15810 GAGGTGCAAATACCCGAAGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAATATC 15869 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411 || ||| || || ||| || || || || ||||||| || |||| | |||| Sbjct 15870 CACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGA-ACCGAAACAACGCAC 15928 Query 133412 AAA-CTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTAT 133470 | |||||||||||||| | | | || || || ||||| | || ||||| | Sbjct 15929 GTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAGGCGGATTGGGCGCT 15988 Query 133471 TAAATGGATCCAGGACAAGCGTGCGA-GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAG 133529 |||||| || ||| | ||| ||| ||| ||||||||||||||| || | | Sbjct 15989 GCGATGGATTAGCGATAAGAATTCGACGTTCGGCTG-TCGTCTCGTTGCTTTCGCCGCTG 16047 Query 133530 TAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTA 133589 ||||||||||||| ||| | | | ||| || ||||| ||||| |||||||||||| Sbjct 16048 TAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTCAAAAAGCGTGGTC 16107 Query 133590 TTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCG 133649 | | || || ||| ||||| ||||| |||||||| | || |||| | ||||| | Sbjct 16108 TCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAGGGCATGCACACAG 16167 Query 133650 AATTTGCC 133657 | || ||| Sbjct 16168 ACTTCGCC 16175 >seq1177 Length=120006 Score = 104 bits (114), Expect = 7e-17 Identities = 132/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 251812 ACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGG 251871 |||||| ||| || ||| ||| || || || ||||||||| |||||| ||||| Sbjct 49055 ACTTTGGATAACAGACACTCAATCAAGTGTGCAATTGTCATACGAGAGGGAATGGCATGC 48996 Query 251872 GGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCA 251931 ||||| ||||| ||||| ||| | || || || | ||||| |||||||||| || | | Sbjct 48995 GGATTAATGATTATGTCCGGTGTTAGACCGTCGGATGTGAACGGCATATCCTCTTGC-CG 48937 Query 251932 ATAATGTTT--CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||| |||| ||||| || |||||||| ||||| | || ||| ||||||||||| Sbjct 48936 ATA-TGTTATCCCAATTGTGCCCTTTTGCCCGTGTCTTGATGCGAATTTATCACCAAT 48880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471785862553171