Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02-
24] 1,683 sequences; 26,819,972 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq959 122 3e-22
seq1177 104 7e-17
>seq959
Length=28360
Score = 122 bits (134), Expect = 3e-22
Identities = 251/368 (68%), Gaps = 4/368 (1%)
Strand=Plus/Plus
Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351
|| || ||| | ||||||| || ||| || || | ||||| |||||| ||||||
Sbjct 15810 GAGGTGCAAATACCCGAAGCACGCTGCTTCTACGGCTTCCAGATCATGATGGAGAATATC 15869
Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411
|| ||| || || ||| || || || || ||||||| || |||| | ||||
Sbjct 15870 CACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGA-ACCGAAACAACGCAC 15928
Query 133412 AAA-CTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTAT 133470
| |||||||||||||| | | | || || || ||||| | || ||||| |
Sbjct 15929 GTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAAGAAGGCGGATTGGGCGCT 15988
Query 133471 TAAATGGATCCAGGACAAGCGTGCGA-GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAG 133529
|||||| || ||| | ||| ||| ||| ||||||||||||||| || | |
Sbjct 15989 GCGATGGATTAGCGATAAGAATTCGACGTTCGGCTG-TCGTCTCGTTGCTTTCGCCGCTG 16047
Query 133530 TAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTA 133589
||||||||||||| ||| | | | ||| || ||||| ||||| ||||||||||||
Sbjct 16048 TAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTGGCTCAAAAAGCGTGGTC 16107
Query 133590 TTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCG 133649
| | || || ||| ||||| ||||| |||||||| | || |||| | ||||| |
Sbjct 16108 TCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGATGAGGGCATGCACACAG 16167
Query 133650 AATTTGCC 133657
| || |||
Sbjct 16168 ACTTCGCC 16175
>seq1177
Length=120006
Score = 104 bits (114), Expect = 7e-17
Identities = 132/178 (74%), Gaps = 4/178 (2%)
Strand=Plus/Minus
Query 251812 ACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGG 251871
|||||| ||| || ||| ||| || || || ||||||||| |||||| |||||
Sbjct 49055 ACTTTGGATAACAGACACTCAATCAAGTGTGCAATTGTCATACGAGAGGGAATGGCATGC 48996
Query 251872 GGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCA 251931
||||| ||||| ||||| ||| | || || || | ||||| |||||||||| || | |
Sbjct 48995 GGATTAATGATTATGTCCGGTGTTAGACCGTCGGATGTGAACGGCATATCCTCTTGC-CG 48937
Query 251932 ATAATGTTT--CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||| |||| ||||| || |||||||| ||||| | || ||| |||||||||||
Sbjct 48936 ATA-TGTTATCCCAATTGTGCCCTTTTGCCCGTGTCTTGATGCGAATTTATCACCAAT 48880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471785862553171
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |