Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq959 114 2e-19 seq243 111 2e-18 seq892 109 7e-18 seq130 89.7 6e-12 >seq959 Length=28360 Score = 114 bits (126), Expect = 2e-19 Identities = 202/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 ||| || || |||||||||||| | | |||||| |||||| | || ||||||| Sbjct 16445 CTCAAAGAAATTGGTCTTGCCCGCCAACGAGATGTTCTCCATGAAGTCAAATGGGTTGGT 16386 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG-AGCAGGCGGTCGGCGACAAACTCGA 868835 | ||||| | | | | ||||||| || | || ||||| ||||| |||||||||| Sbjct 16385 GGCGTTGTAATACCTGCTGTTGCCGAGCG-CGAGCAGTAGGCGATCGGCCACAAACTCGA 16327 Query 868836 TGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCA 868895 |||| |||||||||||| || ||||||||| | || || || |||| || || ||| Sbjct 16326 TGTATTGGCACATGAGGTTGGAGTTCATGCCTAGTAGTGCGACAGGCAATGAGTCTGTCA 16267 Query 868896 CAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACGTCGGCCGA-- 868953 | ||||| || || || |||||| || |||||| ||| || || |||| Sbjct 16266 CGAACTCCTTTTCAATGGTGACGGCTTCAGTGATGATGCTCCTCACCAGCTC--CCGATC 16209 Query 868954 GGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCA 869003 |||||||||| || | ||||||| ||||| ||||| ||||| Sbjct 16208 GGGCTTGTTGCGAAGGTGGGAAAAGAGCAGACAGGCGAAGTCTGTGTGCA 16159 >seq243 Length=163308 Score = 111 bits (122), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| ||| || || || | ||||||||||||||||| || Sbjct 58190 GCTTGGCCAGCTCGCCGGGCAGGATGAGCCGGACAGAGGTCTGGATCTCGCGCGATGAGA 58249 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| | |||||| | ||||| || ||| ||| || | | Sbjct 58250 TGGTCGACTTCTTGTTGTACGCCGCCAGCTTGGATGCCTCAGTTGCGACGCGCTCAAATA 58309 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| ||||| ||||||| || |||||| | ||||||||| ||| ||| || | Sbjct 58310 TGTCGTTCACAAATGAGTTCAGGATCGACATGGCGCGGTTGGAGATACCCGTGTCAGGAT 58369 Query 1254523 GCACCTGCTTGAGCAC 1254538 ||||||||||||| || Sbjct 58370 GCACCTGCTTGAGAAC 58385 >seq892 Length=11077 Score = 109 bits (120), Expect = 7e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | |||||||| ||||| ||| | || || ||| | ||||||||| |||| Sbjct 9948 CTATTCGAGATCATCCTCGCAGCCAATTACATGGATATTAAGGCGCTGCTCGATGTTGGC 9889 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| ||||||||||||||||||| || || |||||||| ||||| || || || Sbjct 9888 TGCAAAACTGTGGCCAACATGATCAAAGGTAAAAGCCCCGAGGAAATCCGGAAAACATTC 9829 Query 1592288 AACATCAAGTACG 1592300 |||||| || ||| Sbjct 9828 AACATCCAGAACG 9816 >seq130 Length=100130 Score = 89.7 bits (98), Expect = 6e-12 Identities = 181/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 ||||| ||||| ||| | || || |||||||| || || | || || ||| | || | Sbjct 44947 GAGGCAGTGCTTGAATTGAATGCATCGGACGAACGAGGTATAGATGTGGTGAGGAACAGG 45006 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATC 1574087 || || | ||| |||| | || ||||||| ||| | |||||| | | || Sbjct 45007 ATAAAAGGCTTTGCCCAAAAGAAGGTCACATTGCCGCCTGGAAGACACAAGATTGTGATA 45066 Query 1574088 CTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAA 1574147 | || |||||||| || | || || | || || || ||||| || || |||||| Sbjct 45067 TTGGATGAGGCCGATAGCATGACATCTGGCGCTCAACAAGCCCTCCGCAGGACAATGGAA 45126 Query 1574148 AAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAG 1574207 | | | | ||| ||||||||||| | |||||||||| ||| | | |||||||| Sbjct 45127 ATATATGCGAGCACAACGCGCTTTGCATTTGCGTGCAACATGTCCAACAAGATCATCGAG 45186 Query 1574208 GCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 |||| || ||| || |||||||| || Sbjct 45187 CCCCTGCAGTCTCGATGTGCCATTCTTCG 45215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107001085138511